HsaALTD0006270-1/3 @ hg19
Alternative 5'ss
Gene
ENSG00000204344 | STK19
Description
serine/threonine kinase 19 [Source:HGNC Symbol;Acc:11398]
Coordinates
chr6:31946680-31947330:+
Coord C1 exon
chr6:31946680-31946775
Coord A exon
NA
Coord C2 exon
chr6:31947191-31947330
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGAGTATGT
5' ss Score
5.66
3' ss Seq
TCTCTCATCTCTGCTTGTAGGTC
3' ss Score
10.19
Exon sequences
Seq C1 exon
AAGGAGCTTCAAGAGCAGGGGGAGATCAGAATCGTCCAGCTGGGCTTCGACTTGGATGCCCATGGAATTATCTTCACTGAGGACTACAGGACCAGA
Seq A exon
NA
Seq C2 exon
GTCCTCAAGGCCTGTGATGGCCGACCGTATGCTGGGGCAGTGCAGAAATTTCTAGCTTCAGTACTTCCAGCCTGTGGGGACCTTAGTTTCCAGCAGGACCAAATGACACAGACCTTTGGCTTCAGGGACTCAGAAATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204344-8-19,9-19,10-19-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(14.2=100)
A:
NA
C2:
PF104944=Stk19=FE(20.6=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTTGGATGCCCATGGAAT
R:
AGAAATTTCTGCACTGCCCCA
Band lengths:
102-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)