MmuALTD1033005-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000061207 | Stk19
Description
serine/threonine kinase 19 [Source:MGI Symbol;Acc:MGI:1860085]
Coordinates
chr17:34832013-34832495:-
Coord C1 exon
chr17:34832446-34832495
Coord A exon
NA
Coord C2 exon
chr17:34832013-34832152
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTCTGT
5' ss Score
3.55
3' ss Seq
GACATCAACTCTGGTTCTAGGTC
3' ss Score
7.47
Exon sequences
Seq C1 exon
TTGACTTGGATGCTCATGGGATTGTCTTCACGGAAGACTACAGGACCCGG
Seq A exon
NA
Seq C2 exon
GTCCTCAAGGCCTGTGATGGCCGACCATGTGCTGGGGCGGTGCAGAAGTTCCTGGCCTCAGTGCTCCCAGCCTGTGGGGACCTCAGTTTCCAGCAGGATCAGATGACACAGACTTATGGCTTCAGGGACCCGGAGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061207-5-8,6-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(13.9=100)
A:
NA
C2:
PF104944=Stk19=FE(20.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCATGGGATTGTCTTCACG
R:
CACTGAGGCCAGGAACTTCTG
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types