RnoEX0060489 @ rn6
Exon Skipping
Gene
ENSRNOG00000000442 | Notch4
Description
notch 4 [Source:RGD Symbol;Acc:1303282]
Coordinates
chr20:4350300-4351657:+
Coord C1 exon
chr20:4350300-4350369
Coord A exon
chr20:4350464-4350602
Coord C2 exon
chr20:4351362-4351657
Length
139 bp
Sequences
Splice sites
3' ss Seq
GGCCTTGCTCTTGCCCCAAGGCA
3' ss Score
6.1
5' ss Seq
CTGGTACAC
5' ss Score
2.74
Exon sequences
Seq C1 exon
GGCGCTGAAGCCAGAGGCAGAAGTGGATGAGGACGGAGTGGTCATGTGCTCGGGCCCTGAAGAGGGCGAG
Seq A exon
GCAGAAAAAACAGCCTCAGCCTCCAGGTGCCAGCTCTGGCCACTGCGCAGCGGCTGTGAAGGGCTCCCACAGGCAGTCATGCTGACCCCTCCTCAGGAGTGTGAATCAGAACTTCCAGATTCGGACACCTGTGGACCTG
Seq C2 exon
ATGGGGTGACACCCCTGATGTCTGCCGTCTTCTGTGGGGGAGTGCAGTCCACCACTGTACAGAGACTGGGACTAGGAAATCCCGAACCCTGGGAACCACTGCTGGATAGAGGGGCCTGCCCCCAGGCTCACACTGTGGGCACTGGAGAGACGCCCCTGCACCTAGCTGCCCGATTCTCTCGGCCAACTGCTGCCCGACGCCTCCTGGAGGCTGGAGCCAACCCCAACCAGCCAGACCGGGCTGGGCGTACCCCACTTCACACTGCAGTAGCTGCTGATGCTCGGGAGGTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000442_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.596 C2=0.606
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(84.0=79.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCAGAAGTGGATGAGGA
R:
CAGCAGTTGGCCGAGAGAATC
Band lengths:
250-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]