BtaEX6098179 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26995678-26996786:+
Coord C1 exon
chr23:26995678-26995759
Coord A exon
chr23:26995854-26995992
Coord C2 exon
chr23:26996491-26996786
Length
139 bp
Sequences
Splice sites
3' ss Seq
CCCTTGTTCTGATCCCCAAGGCT
3' ss Score
6.18
5' ss Seq
CTGGTACGT
5' ss Score
9.57
Exon sequences
Seq C1 exon
GGCACTGAAAGCAGAGGCAGACATGGATGAGGATGGTGTTGTGATGTGCTCAGTCCCCAAGGAAGGAGAGGAGGTGGGCCAG
Seq A exon
GCTGAAGAAATGGCCTCACCCCCCAAGTGCCAGCTCTGGTCTCTGAGCAGTGACTGCCAAGAGCTCCCCCAGGCAGCCATGCTGACTCCTCCCCAGGATTCTGAGATGGATGTCCCTGACGTGGACACCCAGGGACCTG
Seq C2 exon
ATGGGGTGACACCCCTGATGTCAGCAGTCTGCTGTGGGGGCGTGGAGTCCAGGACCTACCAGGAGACATGGCTGGGAAGTCCTGAGCCCTGGGAACCTCTGCTGGAGGGAGGGGCCTGTCCCCAGGTTCACACTGTGGGCACTGGGGAGACACCCCTGCACCTGGCTGCTCGATTCTCCCGGCCAACCGCTGCCCGCCGCCTCCTCGAGGCTGGAGCAAACCCCAACCAGCCAGACCGGGCAGGGCGCACCCCGCTTCACACGGCTGTGGCTGCTGATGCTAGGGAGGTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424-'28-34,'28-32,29-34=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.660 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(81.5=75.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCAGACATGGATGAG
R:
GAGAATCGAGCAGCCAGGTG
Band lengths:
250-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]