MmuEX6077102 @ mm10
Exon Skipping
Gene
ENSMUSG00000015468 | Notch4
Description
notch 4 [Source:MGI Symbol;Acc:MGI:107471]
Coordinates
chr17:34584781-34586209:+
Coord C1 exon
chr17:34584781-34584850
Coord A exon
chr17:34584991-34585129
Coord C2 exon
chr17:34585905-34586209
Length
139 bp
Sequences
Splice sites
3' ss Seq
GTCCTTGCTCTTGCCCCAAGGCT
3' ss Score
6.87
5' ss Seq
CTGGTACAC
5' ss Score
2.74
Exon sequences
Seq C1 exon
GGCACTGAAGCCAGAGGCCGAAGTGGATGAGGATGGAGTGGCCATGTGCTCGGGCCCTGAAGAGGGAGAG
Seq A exon
GCTGAAGAAACAGCCTCAGCCTCCAGGTGCCAGCTTTGGCCGCTCAACAGCGGCTGTGGAGAGCTCCCCCAGGCAGCCATGCTGACCCCTCCTCAGGAGTGTGAATCGGAGGTTCTGGATGTGGACACCTGTGGACCTG
Seq C2 exon
ATGGGGTGACACCCCTGATGTCAGCCGTCTTCTGTGGGGGAGTGCAGTCCACGACTGGGGCTAGTCCACAGAGACTGGGGCTAGGAAATCTGGAACCCTGGGAACCACTGCTGGATAGAGGGGCCTGCCCCCAGGCTCACACTGTGGGCACTGGAGAGACGCCTCTGCACCTAGCTGCCAGATTCTCTCGGCCAACCGCTGCCCGCCGCCTCCTTGAGGCTGGAGCCAACCCCAACCAGCCAGACCGCGCTGGGCGCACCCCACTTCACACTGCTGTGGCTGCCGACGCTCGGGAGGTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015468-'31-50,'31-46,38-50=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=0.617 C2=0.608
Domain overlap (PFAM):
C1:
PF076847=NODP=PD(2.3=33.3)
A:
NO
C2:
PF127962=Ank_2=PU(82.1=76.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCGAAGTGGATGAGGAT
R:
GAATCTGGCAGCTAGGTGCAG
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types