RnoINT0015059 @ rn6
Intron Retention
Gene
ENSRNOG00000000439 | Ager
Description
advanced glycosylation end product-specific receptor [Source:RGD Symbol;Acc:69258]
Coordinates
chr20:4365011-4365494:+
Coord C1 exon
chr20:4365011-4365152
Coord A exon
chr20:4365153-4365467
Coord C2 exon
chr20:4365468-4365494
Length
315 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CTCTGACCACTGTCTTCCAGAAA
3' ss Score
7.42
Exon sequences
Seq C1 exon
GGCACACCCCTGCCCCTTGCCCCCAGCCCTGTGCTGCTCCTCCCTGAGGTAGGGCATGAGGATGAGGGCATCTACAGCTGCGTGGCCACCCACCCTAGCCATGGACCTCAGGAAAGCCCTCCTGTCAACATCAGGGTCACAG
Seq A exon
GTAACCCCTCCCCAAATCCCAGGGATCCTGGGGCTCAGGTGAGGGACACAAGACGCCAACTCCCTACCCCACTCAGACATGAACCCCAATAGCCATGCCACCCCTTCCTCGGTGCACTCAAAAGCCTGTCAGGAGGGGTTGGGGATTTAGCTCAGTGGGAGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTTGGTCCCCAGCTGGGGGGGGGGGGGCAGGGGGAAGCTTGTCAAGAGTAAAGCCCAGCTTCTCCACTGAGGGGAGATGCCACTGGGTCTGAGCTTGTCTTCCCTCTGACCACTGTCTTCCAG
Seq C2 exon
AAACCGGTGATGAAGGACAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000439:ENSRNOT00000000508:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(54.2=93.8),PF0240410=SCF=PU(13.5=25.0)
A:
NA
C2:
PF0240410=SCF=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]