RnoEX0007823 @ rn6
Exon Skipping
Gene
ENSRNOG00000000439 | Ager
Description
advanced glycosylation end product-specific receptor [Source:RGD Symbol;Acc:69258]
Coordinates
chr20:4365011-4365738:+
Coord C1 exon
chr20:4365011-4365152
Coord A exon
chr20:4365468-4365494
Coord C2 exon
chr20:4365612-4365738
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTCTGACCACTGTCTTCCAGAAA
3' ss Score
7.42
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGCACACCCCTGCCCCTTGCCCCCAGCCCTGTGCTGCTCCTCCCTGAGGTAGGGCATGAGGATGAGGGCATCTACAGCTGCGTGGCCACCCACCCTAGCCATGGACCTCAGGAAAGCCCTCCTGTCAACATCAGGGTCACAG
Seq A exon
AAACCGGTGATGAAGGACAAGCTGCAG
Seq C2 exon
GCTCTGTGGATGGGTCTGGGCTGGGAACGCTAGCCCTGGCCTTAGGGATCCTGGGAGGCCTGGGAATAGCCGCTCTGCTCATTGGGGCCATCCTGTGGCGAAAACGACAACCCAGACTCGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000439-'13-18,'13-16,15-18
Average complexity
S
Mappability confidence:
100%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=1.000 C2=0.221
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(54.2=93.8),PF0240410=SCF=PU(13.5=25.0)
A:
PF0240410=SCF=FE(10.1=100)
C2:
PF0240410=SCF=FE(47.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAGCCCTCCTGTCAACA
R:
CCAATGAGCAGAGCGGCTATT
Band lengths:
118-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]