RnoINT0015060 @ rn6
Intron Retention
Gene
ENSRNOG00000000439 | Ager
Description
advanced glycosylation end product-specific receptor [Source:RGD Symbol;Acc:69258]
Coordinates
chr20:4365468-4365738:+
Coord C1 exon
chr20:4365468-4365494
Coord A exon
chr20:4365495-4365611
Coord C2 exon
chr20:4365612-4365738
Length
117 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTTCCCTATGTCCTTCCAGGCT
3' ss Score
10.02
Exon sequences
Seq C1 exon
AAACCGGTGATGAAGGACAAGCTGCAG
Seq A exon
GTGAGGGACTAGGAGTCAATCAGAGAGAAGCACATGGCTGCCTTGTGTGGCTAGGGTCACAAGGAAGGAGTGGTGTACGCTAGAGCTATGCCCTCAATCTTCCCTATGTCCTTCCAG
Seq C2 exon
GCTCTGTGGATGGGTCTGGGCTGGGAACGCTAGCCCTGGCCTTAGGGATCCTGGGAGGCCTGGGAATAGCCGCTCTGCTCATTGGGGCCATCCTGTGGCGAAAACGACAACCCAGACTCGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000439:ENSRNOT00000000508:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.221
Domain overlap (PFAM):
C1:
PF0240410=SCF=FE(10.1=100)
A:
NA
C2:
PF0240410=SCF=FE(47.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCGGTGATGAAGGACAAGC
R:
CTCTCCTCGAGTCTGGGTTGT
Band lengths:
154-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]