HsaINT1003178 @ hg38
Intron Retention
Gene
ENSG00000204305 | AGER
Description
advanced glycosylation end-product specific receptor [Source:HGNC Symbol;Acc:HGNC:320]
Coordinates
chr6:32181351-32181632:-
Coord C1 exon
chr6:32181606-32181632
Coord A exon
chr6:32181478-32181605
Coord C2 exon
chr6:32181351-32181477
Length
128 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTTCCCTGTCTCCGTACAGGCT
3' ss Score
10.62
Exon sequences
Seq C1 exon
AACCAGGCGAGGAGGGGCCAACTGCAG
Seq A exon
GTGAGGGGTTTGATAAAGTCAGGGAAGCAGAAGATAGCCCCCAACACATGTGACTGGGGGGATGGTCAACAAGAAAGGAATGGTGAGTGGTGGTGGCTGTGCTCTCAATTTTCCCTGTCTCCGTACAG
Seq C2 exon
GCTCTGTGGGAGGATCAGGGCTGGGAACTCTAGCCCTGGCCCTGGGGATCCTGGGAGGCCTGGGGACAGCCGCCCTGCTCATTGGGGTCATCTTGTGGCAAAGGCGGCAACGCCGAGGAGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204305:ENST00000375076:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.983 A=NA C2=0.386
Domain overlap (PFAM):
C1:
PF066977=DUF1191=FE(8.0=100)
A:
NA
C2:
PF066977=DUF1191=FE(37.5=100)
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGGGCCAACTGCAG
R:
CTCTCCTCTCCTCGGCGTTG
Band lengths:
146-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains