MmuINT0012632 @ mm9
Intron Retention
Gene
ENSMUSG00000015452 | Ager
Description
advanced glycosylation end product-specific receptor [Source:MGI Symbol;Acc:MGI:893592]
Coordinates
chr17:34737296-34737566:+
Coord C1 exon
chr17:34737296-34737322
Coord A exon
chr17:34737323-34737439
Coord C2 exon
chr17:34737440-34737566
Length
117 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCTTCCCTATGTCCCTACAGGCT
3' ss Score
10.84
Exon sequences
Seq C1 exon
AAACCGGCGATGAGGGGCCAGCTGAAG
Seq A exon
GTGAGGGACTGGACTAAAGTCAGAGAGGAGCATATGGCTGCCGCATGTGACTGGGTTCACAAGGAAGGAGTGGTGTATGCTAGAGCTATACCCTCAATCTTCCCTATGTCCCTACAG
Seq C2 exon
GCTCTGTGGGTGAGTCTGGGCTGGGTACGCTAGCCCTGGCCTTGGGGATCCTGGGAGGCCTGGGAGTAGTAGCCCTGCTCGTCGGGGCTATCCTGTGGCGAAAACGACAACCCAGGCGTGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015452-Ager:NM_007425:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.815 A=NA C2=0.264
Domain overlap (PFAM):
C1:
PF066977=DUF1191=FE(8.0=100),PF0240410=SCF=FE(9.8=100)
A:
NA
C2:
PF066977=DUF1191=FE(37.5=100),PF0240410=SCF=FE(45.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCGGCGATGAGGGGC
R:
CTCTCCTCACGCCTGGGTT
Band lengths:
154-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: