MmuEX0004224 @ mm9
Exon Skipping
Gene
ENSMUSG00000015452 | Ager
Description
advanced glycosylation end product-specific receptor [Source:MGI Symbol;Acc:MGI:893592]
Coordinates
chr17:34736941-34737566:+
Coord C1 exon
chr17:34736941-34737082
Coord A exon
chr17:34737296-34737322
Coord C2 exon
chr17:34737440-34737566
Length
27 bp
Sequences
Splice sites
3' ss Seq
GACCACTCTTTGTCCTCTAGAAA
3' ss Score
8.23
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGTGCACCCTTGCCCCTGGCTCCCAGCCCTGTGCTGCTCCTCCCTGAGGTGGGGCACGAGGATGAGGGCACCTATAGCTGCGTGGCCACCCACCCTAGCCACGGACCTCAGGAAAGCCCTCCTGTCAGCATCAGGGTCACAG
Seq A exon
AAACCGGCGATGAGGGGCCAGCTGAAG
Seq C2 exon
GCTCTGTGGGTGAGTCTGGGCTGGGTACGCTAGCCCTGGCCTTGGGGATCCTGGGAGGCCTGGGAGTAGTAGCCCTGCTCGTCGGGGCTATCCTGTGGCGAAAACGACAACCCAGGCGTGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015452-'10-9,'10-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.792 A=0.815 C2=0.264
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(54.2=93.8),PF066977=DUF1191=PU(28.6=66.7),PF0240410=SCF=PU(16.3=31.2)
A:
PF066977=DUF1191=FE(8.0=100),PF0240410=SCF=FE(9.8=100)
C2:
PF066977=DUF1191=FE(37.5=100),PF0240410=SCF=FE(45.7=100)
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAGCATCAGGGTCACAG
R:
TCGTTTTCGCCACAGGATAGC
Band lengths:
128-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types