HsaEX0003067 @ hg19
Exon Skipping
Gene
ENSG00000204305 | AGER
Description
advanced glycosylation end product-specific receptor [Source:HGNC Symbol;Acc:320]
Coordinates
chr6:32149128-32150165:-
Coord C1 exon
chr6:32150024-32150165
Coord A exon
chr6:32149383-32149409
Coord C2 exon
chr6:32149128-32149254
Length
27 bp
Sequences
Splice sites
3' ss Seq
GATCCAACTTTGTCTTCCAGAAC
3' ss Score
8.37
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGTGTGCCCTTGCCCCTTCCCCCCAGCCCTGTGCTGATCCTCCCTGAGATAGGGCCTCAGGACCAGGGAACCTACAGCTGTGTGGCCACCCATTCCAGCCACGGGCCCCAGGAAAGCCGTGCTGTCAGCATCAGCATCATCG
Seq A exon
AACCAGGCGAGGAGGGGCCAACTGCAG
Seq C2 exon
GCTCTGTGGGAGGATCAGGGCTGGGAACTCTAGCCCTGGCCCTGGGGATCCTGGGAGGCCTGGGGACAGCCGCCCTGCTCATTGGGGTCATCTTGTGGCAAAGGCGGCAACGCCGAGGAGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204305-'12-13,'12-12,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.740 A=0.978 C2=0.424
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(53.6=93.8),PF066977=DUF1191=PU(30.1=64.6)
A:
PF066977=DUF1191=FE(8.1=100)
C2:
PF066977=DUF1191=FE(40.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAGCATCAGCATCATCG
R:
TGCCACAAGATGACCCCAATG
Band lengths:
121-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)