HsaEX0003067 @ hg38
Exon Skipping
Gene
ENSG00000204305 | AGER
Description
advanced glycosylation end-product specific receptor [Source:HGNC Symbol;Acc:HGNC:320]
Coordinates
chr6:32181351-32182388:-
Coord C1 exon
chr6:32182247-32182388
Coord A exon
chr6:32181606-32181632
Coord C2 exon
chr6:32181351-32181477
Length
27 bp
Sequences
Splice sites
3' ss Seq
GATCCAACTTTGTCTTCCAGAAC
3' ss Score
8.37
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGTGTGCCCTTGCCCCTTCCCCCCAGCCCTGTGCTGATCCTCCCTGAGATAGGGCCTCAGGACCAGGGAACCTACAGCTGTGTGGCCACCCATTCCAGCCACGGGCCCCAGGAAAGCCGTGCTGTCAGCATCAGCATCATCG
Seq A exon
AACCAGGCGAGGAGGGGCCAACTGCAG
Seq C2 exon
GCTCTGTGGGAGGATCAGGGCTGGGAACTCTAGCCCTGGCCCTGGGGATCCTGGGAGGCCTGGGGACAGCCGCCCTGCTCATTGGGGTCATCTTGTGGCAAAGGCGGCAACGCCGAGGAGAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204305-'16-16,'16-15,19-16
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.736 A=0.983 C2=0.386
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(91.8=93.8),PF066977=DUF1191=PU(27.7=64.6)
A:
PF066977=DUF1191=FE(8.0=100)
C2:
PF066977=DUF1191=FE(37.5=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAGCATCAGCATCATCG
R:
TGCCACAAGATGACCCCAATG
Band lengths:
121-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development