RnoALTA0000627-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000052039 | AABR07044388.3
Description
NA
Coordinates
chr20:4427815-4428527:-
Coord C1 exon
chr20:4428364-4428527
Coord A exon
chr20:4427892-4427968
Coord C2 exon
chr20:4427815-4427891
Length
77 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
CATTTTCTCTGTCCTGGAAGGCA
3' ss Score
5.86
Exon sequences
Seq C1 exon
AGCAGGGAGCCTGGAAGGGGGACCGAATGAAGACCCAGCCCTGTGCCCTGTGGGGACATCAGTCAGCCTCTGTAGGCCCGCTGAACCGTGAGTCATGGGTGCACAGCCCTCGCCAAGAACAAGTTATGGGATCGTCTCTGCAAGCTCTGAGCCCTTCCCAGCCC
Seq A exon
GCACTCCCACCACGAGTTCAGCGACGGAGCAGCGCAGAAGAGAAACCCTCCACTTCTCCCTTCTCTGGTTTCCCCAG
Seq C2 exon
AGTTCTGCTACTTACCTGGAGAGCCTGGTGGCTTGTGCTGGCTGCTACACCTCTGAACCTGCACAGTCCCAACCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052039-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACATCAGTCAGCCTCTGT
R:
GTGCAGGTTCAGAGGTGTAGC
Band lengths:
176-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]