RnoEX0070309 @ rn6
Exon Skipping
Gene
ENSRNOG00000000433 | Prrt1
Description
proline-rich transmembrane protein 1 [Source:RGD Symbol;Acc:1359348]
Coordinates
chr20:4392626-4395046:+
Coord C1 exon
chr20:4392626-4392765
Coord A exon
chr20:4393727-4394265
Coord C2 exon
chr20:4394861-4395046
Length
539 bp
Sequences
Splice sites
3' ss Seq
CTCGGCTTTTCCATGGCCAGGCC
3' ss Score
6.13
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CTCGCTGCTGCTGCTGCTACCGCCGCTGCACCGGCTGCGCCATCCGGGACTCAGACTCCTGCGCCAGCAGTCAGGGGGCCCTGACTCTAGCTTCAGAGACCCTGTTCCAGCGCTTGCGAGCATGTCGTCAGAAAAGTCAG
Seq A exon
GCCTTCCAGACTCGGTTCCCCACACTTCACCTCCGCCCTACAATGCCCCCCAACCTCCAGCCGAGCCCCCCATCCCTCCCCCACAAACCGCTCCATCCTCTCATCATCATCACCACCACCACTACCACCAGTCTGGCACTGCCACCCTCCCGCGCTTAGGAGCAGGTGGCCTGGCCTCTGCTGCGGCTGGCGCTCAACGTGGTCCTTCGTCCTCTGCCACGCTACCGCGGCCCCCCCACCATGCCCCTCCCGGTCCCGCTGCTGGGGCTCCCCCACCCGGCTGTGCTACCCTACCCCGCATGCCACCCGACCCTTATCTGCAGGAGACTCGCTTCGAGGGTCCACTTCCCCCACCACCGCCTGCGGCCGCCGCCCCACCCCCACCAGCGCCTGCCCCGACGGCCCAAGCCCCAGGCTTCGTGGTGCCCACGCACGCGGGGGCGGTGGGCACGTTGCCGCTGGGGGGCTACGTGGCTCCGGGCTACCCGCTGCAGCTGCAGCCGTGCACCGCTTATGTCCCGGTGTATCCGGTGGGCACG
Seq C2 exon
CCCTACGCAAGCGGGACCCCCGGGGGTCCAGGAGTGACCTCCACTCTGCCCCCGCCGCCCCAGGGCCCAGGGTTGGCTCTGTTGGAGCCCAGGCGCCCGCCGCATGACTACATGCCCATCGCTGTGCTGACCACCATCTGCTGCTTCTGGCCCACAGGCATCATCGCCATCTTCAAGGCCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000433-'1-8,'1-4,3-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.800 C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF045057=Dispanin=PU(54.4=79.0)
Main Skipping Isoform:
ENSRNOT00000000495fB11460
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGCTGCTACCG
R:
CTGCACGGCCTTGAAGATGG
Band lengths:
322-861
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]