BtaEX0028687 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038904 | PRRT1
Description
proline-rich transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:13943]
Coordinates
chr23:27038200-27040272:+
Coord C1 exon
chr23:27038200-27038316
Coord A exon
chr23:27039225-27039760
Coord C2 exon
chr23:27040113-27040272
Length
536 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCTTACCGCCCCCAGGTC
3' ss Score
9.37
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GCCGGCTGCGCAATCTGCGCACCCAGACTCCGGTGCTAGCCAGGGACCCCGACTCCGGACTCCGGCTGCACGGATCTTGTCCCAGGGAGAGCGCAAGCATGTCATCCGAAAAGTCAG
Seq A exon
GTCTCCCTGACTCAGTCCCTCACACCTCTCCACCACCCTACAATGCCCCCCAGCCCCCCGCCGAACCTCCTGCCCCGCCCCCACAGACAGCCCCTTCCTCGCACCATCACCACCACCACCACTACCACCAGTCCGGCACTGCCACCCTCCCGCGCTTAGGGGCAGGGGGCCTGGCTTCTGGGGCCGCCGCTCAGCGCGGTCCCTCGTCCTCCGCTACCTTGCCAAGGCCCCCACACCATGCCCCTCCTGGCCCGGCCGCTGGGGCGCCCCCACCCGGCTGCGCTACCTTGCCCCGCATGCCACCCGACCCTTACCTGCAGGAGACTCGCTTCGAGGGCCCACTGCCCCCACCGCCGCCCGCCGCCGCCGCCCCGCCCCCGCCGGCGACCTCTCATACTGCCCAGGCCCCGGGCTTCGTGGTGCCCACGCACACGGGAGCGGTAGGCACGCTGCCGCTGGGTGGCTACGTAGCCCCGGGTTACCCTTTACAGCTGCAGCCTTGCACTGCCTACGTGCCGGTCTACCCGGTGGGCACG
Seq C2 exon
CCCTATGCAGGCGCGACCCCGGGGGGAACAGGAGTAACCTCCACGCTCCCCCCGCCACCCCAGGGCCCAGGGCTGGCCCTGCTGGAGCCAAGGCGCCCGCCCCACGACTACATGCCCATCGCGGTGCTGACCACCATCTGCTGCTTCTGGCCTACAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038904-'1-2,'1-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.816 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF045057=Dispanin=PU(45.6=75.9),PF0489312=Yip1=PU(38.6=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATCTGCGCACCCAGACTC
R:
GTAGGCCAGAAGCAGCAGATG
Band lengths:
262-798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development