DreEX6073230 @ danRer10
Exon Skipping
Gene
ENSDARG00000062208 | prrt1
Description
proline-rich transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-686]
Coordinates
chr19:27276402-27284793:-
Coord C1 exon
chr19:27284482-27284793
Coord A exon
chr19:27279074-27279432
Coord C2 exon
chr19:27276402-27276593
Length
359 bp
Sequences
Splice sites
3' ss Seq
GTGAATCTGTCTTGGTTCAGGAC
3' ss Score
8.3
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTAACTAGATGCGTTCGTTGTAACCTGTTTTTCTGCTGCTGCTGCTGCTGATGTTGTGGATGTTGCAGTGTGACCGTGAAAAACCAGCACCAAACATCCAGTGGCTTTTAAACCCAGCTTACCCACAGCCTCTACACAGTGTACATCAGGATTACCATCTGAAGATGCGTTATAATTAGCCTGGAGAAATCATCAGCTTCGTCTGTTGCGGTCTGACACAAAGACGGACGCACTGCTTGGATTTATTACAGGAGAGACAAACTGAACATCACCGAAACGGATACATAAACACGATGTCGTCGGAAAAACACG
Seq A exon
GACTGGAGGAAGCAGCAGGGCGACAGCCTATGTCTCAGCCCATGATGCAGATGGCTCCACCTCCATACCTGCCCACCCAGGACCCCAACATGCCCCCACATCCCCCTCCACCCGGCTGTGCCCCGCAGCCTAACTACCCTCCTCCGCCTCCTCCACCGGGGTCTGATGGATATCTGCAGGAAACACAATTCCACTCTGGGACGCTTGGACCCCAGGGAGCTCCGAATGGATACCCAGTGCAAACACATGGACCAGTGGGCACCGTCCCGCATCCTCCTGTGGGCTATTTACATCCAGGATACCCCCTACAACTGCAGCCCTGCACAGCCTATGTGCCCGTTTATCCTATAGGCACAGGG
Seq C2 exon
GCGCAGCCTTACATGCCAAATGGTGCGCCTCATCCAGGTGTTGCCCCAGGCCAGATGGCCATGCATATGCCAAACGGCATTGCTCTGATGGAGTCCCGTCGTCCTCCTCATGATTACCTGCCCATCGCCGTCCTAACCACCGTCTGCTGCTTTTGGCCCACAGGAATAATCGCCATCATCAAAGCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062208-'1-2,'1-0,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.770 C2=0.219
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF045057=Dispanin=PU(50.0=64.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCAGTGTGACCGTGAAA
R:
CTCCATCAGAGCAATGCCGTT
Band lengths:
345-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]