MmuEX0037428 @ mm10
Exon Skipping
Gene
ENSMUSG00000015476 | Prrt1
Description
proline-rich transmembrane protein 1 [Source:MGI Symbol;Acc:MGI:1932118]
Coordinates
chr17:34629533-34631955:+
Coord C1 exon
chr17:34629533-34629704
Coord A exon
chr17:34630633-34631171
Coord C2 exon
chr17:34631770-34631955
Length
539 bp
Sequences
Splice sites
3' ss Seq
CTCGGCTTTTCCATGGCCAGGCC
3' ss Score
6.13
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CCCCCCCAACACACACTGTCTTCATCTCTCCATTTCCGCGCTGCTGCTGCTACCGCCGCTGCGCCATCCCGGACTGAGACACTAAGACTCCTGCGCCAGCAGTCAGGGGGCCCTGACTCCAGCTTCAGAGACCCTGTCCCAACGATTGCAAACATGTCGTCAGAAAAGTCAG
Seq A exon
GCCTTCCAGACTCGGTTCCCCACACTTCACCGCCGCCCTACAATGCCCCCCAGCCACCGGCCGAGCCCCCCATCCCGCCCCCACAAACGGCCCCATCCTCACATCACCACCACCACCACCATTACCACCAGTCTGGCACCGCCACCCTCCCGCGCTTAGGAGCAGGTGGCCTGGCCTCTGCTGCGGCCAGTGCTCAACGCGGTCCTTCGTCTTCCGCCACGCTACCGCGGCCCCCCCACCATGCCCCGCCCGGCCCCGCCGCTGGGGCTCCCCCACCCGGCTGTGCTACCTTACCCCGCATGCCACCCGACCCTTATCTGCAGGAGACTCGCTTCGAGGGTCCACTTCCCCCACCACCGCCTGCGGCCGCCGCCCCGCCCCCACCAGCGCCTGCCCCGACGGCCCAAGCCCCGGGCTTCGTGGTTCCCACGCACGCGGGGGCGGTGGGCACGTTGCCGCTGGGGGGCTACGTGGCGCCGGGCTACCCGCTGCAGCTGCAGCCGTGCACTGCTTATGTCCCTGTGTATCCGGTGGGCACG
Seq C2 exon
CCCTACGCAGGCGGGACCCCCGGGGGTCCTGGAGTGACCTCCACTCTGCCCCCGCCGCCCCAGGGCCCAGGATTGGCTCTGTTGGAGCCCAGGCGTCCGCCACACGACTACATGCCCATCGCTGTGCTGACCACCATCTGCTGCTTCTGGCCCACAGGCATCATCGCCATCTTCAAGGCCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015476-'1-9,'1-5,3-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.800 C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF045057=Dispanin=PU(54.4=79.0)
Main Skipping Isoform:
ENSMUST00000015620fB15255
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAACACACACTGTCTTC
R:
GGCCTTGAAGATGGCGATGAT
Band lengths:
350-889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types