RnoINT0053403 @ rn6
Intron Retention
Gene
ENSRNOG00000000436 | Egfl8
Description
EGF-like-domain, multiple 8 [Source:RGD Symbol;Acc:1549706]
Coordinates
chr20:4378211-4378757:-
Coord C1 exon
chr20:4378604-4378757
Coord A exon
chr20:4378430-4378603
Coord C2 exon
chr20:4378211-4378429
Length
174 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
GCCACTTTGCCATTAACCAGGTT
3' ss Score
5.02
Exon sequences
Seq C1 exon
TGGGCCACACAGGCTGGGGCCTGGGTTCGAGCAGTGCTGCCGGTGGCCCCTGAAGACCTGCGGCCTGAACAGGTGGCTGAACTTTGGGGCCGGGGTGACAGGATCGAGTCCCTCAGTGACCAGGTGCTGCTACTGGAGGAAAGGCTGGGTGCCT
Seq A exon
GTGAGTCCCCCGCTCCTCCTCCATGATTGAAGACCCAGCCTCAAGTCAGCACTGCACTCCTGAAACCCTCCCTCCCACACTGTCCTCGCCCTGTCCTGGTCCCCAGGCCACTTGTGTGTTGTTGGGCGACAGGTCTCCAGGCCACAGCCACCTTGCCACTTTGCCATTAACCAG
Seq C2 exon
GTTCCTGTGAGGACAACAGCCTGGGCCCAGGCCTCCATGGATGACAAGGAATGCCGGCAGCGGCTGGGGTCCCTAACTCACACAGAAACTATGCCTGCTAACGTGGGATCCCAAGATCTGGTACCAACCCCGAGGTGCTACAGCCACAGAGAACCCCACGTCTCTCTTTCTCTTTATTTCCAGTTGCTTGCTGTTATCCAGATAATAAAAACCAACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000436:ENSRNOT00000000499:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGGTGGCTGAACTTTGGG
R:
GGTTCTCTGTGGCTGTAGCAC
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]