GgaINT1012126 @ galGal4
Intron Retention
Gene
ENSGALG00000002420 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr17:7745152-7747750:-
Coord C1 exon
chr17:7747588-7747750
Coord A exon
chr17:7746178-7747587
Coord C2 exon
chr17:7745152-7746177
Length
1410 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TTTCTTTTAAATCTTACCAGGTT
3' ss Score
8.78
Exon sequences
Seq C1 exon
AAACTCCAGTTGGTGCTGGCTCCCTTCCACAACCTCATGCCATCTGCACCAGAGGACGTCGGCACAGACCCCATCAGCCGACTGTCCCACTCCCTCCAGCAACTGGACAGAATCGACTCCTTGAGTGAGCAGATCTCCTTCCTCGAGGAGCGGCTGGAGACTT
Seq A exon
GTAAGTGCCTGCAAAAAGGAGGGGTGAAGCATTGCACTGCACCTCTCCCTATTTTCCCCCCACACACTCAAACACCACTGACACAGCCTCAGACTTCAGTGCCTCAGCTTTGCTTGGGGCTGTTTATGCTATGCATCTTGGCTGTGGAGAGCAGATGCAAGCCAGCAAGATCAGTAACACATATACCACTATTAATCTTGATCTTCTCTCAAACTCAGCAGCCTGTAATTAATAAAAGATGAATACAAACAACCCATTAGCTTCATTCCAAAGCTGTCTGGCTGCACCATCTGATTGCCCTCATAGCAGCCATAGAAGCACACGGAAACAGGGCTCCGTTTCTGTCTCTCATCTGTCCAGGATGAAATGAAAAGAAAAAGCCCCAACTCTTAAAAACTTAATAGTCCAAAAAGTCGATCAGGAAAGTTTAGGGAGCGTGCCCAAGTTGACAGATTTATGAGCCTGGGAAGTTTTAGGCATGTTTCTTTTTGAAGTCTGTAGAGCAGTACTTTGTCACGCAGTGCACCACAGAGGTGTCTTAAATAGCAGACTCGTGAGTGGCAGCAGCCTCATGCTAAAGGCACAGGGATTACATTAACAGGGAAGAGGAAGGGACAGGGAGGTTTCAGGGCATACCCAGTCCCAGTTCACTGCTTCTGCTAATGGCTTAGGTAGAAGGACTTCAAAGAGCTTGCAGCTTGCTTGAAGCTGCAAATTGATGCTTAAAAAAAAAAAAACCAACTCAGAAAGGGGTAATTATGAAAACCTACAAGTGTCTCAGTAGACCAGGTTTCCTAGCGTTGCCCTATGCTTATTATTAGTGACAGCACTGAGGAATGGGAACAGCATCACAAGGTAACATGGATTTGTTCCCAAGGAATGATTCCAAAGTTCTGTATTTAGCTTCTGCCAAGCCTGTTCCAGCAGGCAAAACTTGCCTTTGTCCCTCCCATGTTCTTGGAAGTCCCTGGAGGATACAAGACTGTTCTGTTGTACCGCAGTGAGTGCTGAGGTTTGCAGAGCATCGGCTGCAGCTGCAGTCAGGACAGCCCAGTCCCAGCTGGCATTCTTGTCAGAGCTTTCCCTGCCTTGGGGTGCTACGCACAGACTTGCCAGGCCCAGAGCCAGTCAAATGGAACCAGGAGGGGGCTTTTGGCAAAGGAAAAACAGTAGAGGTGGATGACATTTATAGGTGGCGAGGTCAACCTCATCTTTCTAGGGAAAGGAGACAGTAAGATTATTTAGCACATGTGAGAAGACAGGGGAGGTCGTTACAGCCAGCACAGGGAACCTGCTCTTCTGTGCCCATTGCTATATTGGTTGGAGGTGCCAGCCCCCACCACCACACCAAACCCTGGCTAACAACAGTGCTGGATTATTTACTTTTTGTTTTCTTTTAAATCTTACCAG
Seq C2 exon
GTTCCTGCAGGAATGAACTCTAGCTGAGCACCCAAAGAATCAGAACAGGCAGACTGCATCTGTAGCTTGTCTCTCTCTCCAGCCCCAGGCTGGGGCCAAAGACGCATCATCTCCAGGAAGGCACAAGGTAGAAAGAGAAGGCTGGTTTCCCTCATCAGCATCTCCAGTATTTTCTCTTCCAACTCACCTTACCAAAGGTCATGAAGTTACTTCCAAACTCGACTTTTAACCCTGAGCATCTCACCCCACTCCTGCTGGAGAGGAAGAAAATAAATGCCTTACCTCATGCCATTAGCAGTGCCTGTCTGGCTGTGCCAGAGACTGGCTCTACACGAGTTCATGTGGTGCTTGGTTTTGTTTGGTTTTTCCTGGCCCTGTAGGGCAGTAATTATAACGCTTTTTACACATGCCTGGAGGCATAGAGCCTGGTTTTATTGCTTTAATGCAAAACCTTTCCCTGTGACACTCCCATTATCAGCACAGAGCAGACAGGGACAAACTTGCGTTGCTCAGCTGTGCCAACAGGGTGAGGCCAAGTCCCCTACACACCTGCTCTGCAGACAGAGCCCGGACAAAGCCCACTTGTTTACACTGGCACAGCACCAGCTGTCAAGGTGGCCATTTCCCCCCACCCAACTGTTGCTGCCTTGGCAGTCCACACCAACCTCCCCAGCTCTGTTTGCTCAAGCCAAGGTTGCAGGTGTAGCAGAGCAGATGTGAGCAATCCAGTACAACACTTGGCTACAACCACAGTTGCAGGATGAGCCCTGTGGGTACAGCCATGCTGCAGAATTATCCTAAAATAAAGCCTCCTGCTGTACACAGAGGATGCTGGCTCATTACTGGAGGGGATGGAGCTCCCTCCATGGCCCCACTTTACTATAGGCTCTTCCTCCTGCAACAGTCCTCGTCCCTCAGCTCCCACACAAAACCAGAAGACTCCTTCATTTAAATAATCAAAAGACTTTTTTTCTTTTTAAGCAAAATACATTATTCTCGACCCAATTAAAACTGAACAGTAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420:ENSGALT00000003809:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACTCCTTGAGTGAGCAGA
R:
GCTAATGGCATGAGGTAAGGCA
Band lengths:
347-1757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]