RnoINT0053396 @ rn6
Intron Retention
Gene
ENSRNOG00000019388 | Egfl7
Description
EGF-like-domain, multiple 7 [Source:RGD Symbol;Acc:708507]
Coordinates
chr3:4043367-4043936:+
Coord C1 exon
chr3:4043367-4043529
Coord A exon
chr3:4043530-4043645
Coord C2 exon
chr3:4043646-4043936
Length
116 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TCTTTCCTCTCCTTCCCTAGGCT
3' ss Score
12.51
Exon sequences
Seq C1 exon
AAACTGCAGCTGGTGCTGGCCCCACTGCACAGCCTGGCCTCTCGGTCCCCGGAGCATGGGCTGCAAGATCCTGGCAGCCTGCTGGCCCACTCCTTCCAGCAGCTGGACCGGATTGACTCACTGAGCGAGCAGGTCTCCTTCCTGGAGGAACAGCTGGGGTCCT
Seq A exon
GTGAGTCCCCCAGATCCTAAGGAACCCATTAGGGGGATACCAGGGCTGGGTGGACGGCACCACCACTGGGATGGGCAGATCTGAAAGTTTATACCCTCTTTCCTCTCCTTCCCTAG
Seq C2 exon
GCTCTTGCAAAAAAGACCTGTGATGGCTTCTCAGTGCCCATGTTGGATTGAGCTGTTACCCCTACGTCCCTTCTAGCCTGAGTTCAAGTGCTGTCCGGTGGTGCCTGTGAGCAGAAGGCCCTGCTTGTTTATCCCTCTCTCTTAGGAGGTTCCTAGGCCCTGGGCATGGGGAGGGGGGTCTTGTGTGGCTCTTAAGTGAGGCTTCCGGGAAAGGAATAAGATCTCCCTGCCTAAGAAGTGAGGTGGGGGCTGTCTCCACCTTTGTCATATTAAAGCTGGGACTTGAGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019388:ENSRNOT00000026318:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTGACTCACTGAGCGAGC
R:
GCCTCACTTAAGAGCCACACA
Band lengths:
256-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]