MmuINT0055818 @ mm9
Intron Retention
Gene
ENSMUSG00000026921 | Egfl7
Description
EGF-like domain 7 [Source:MGI Symbol;Acc:MGI:2449923]
Coordinates
chr2:26447638-26448202:+
Coord C1 exon
chr2:26447638-26447800
Coord A exon
chr2:26447801-26447937
Coord C2 exon
chr2:26447938-26448202
Length
137 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TTTTTCCTCTCCTGCCCTAGGCT
3' ss Score
11.06
Exon sequences
Seq C1 exon
AAACTGCAGTTGGTGCTGGCCCCACTGCACAGCCTGGCCTCTCGGTCCACAGAGCATGGGCTACAAGATCCTGGCAGCCTGCTGGCCCATTCCTTCCAGCAGCTGGACCGAATTGATTCACTGAGTGAGCAGGTGTCCTTCTTGGAGGAACATCTGGGGTCCT
Seq A exon
GTGAGTCCCACAAGACACCACTCCACCCACAGAGAGCCTAGGGGACCCATGGGGTGGACACCAGGGCTGGGTGGATGGAACTTCTTCTGGGATGGGCAGATTTGCAAGTTTACACCTTTTTTCCTCTCCTGCCCTAG
Seq C2 exon
GCTCCTGCAAAAAAGATCTGTGATAACCTCTCACCACCCAGGCTGGATAGAGCAGTCATCCCTAGATCCCTTGTAGCCAGAGTTCAGGCGCTGTCTGGTGGTGCCTATGAGCAGAAGGCCCTGCCTCATTGTCCCTCTTTCTTAGGAGGTTCCTAGGACTTGGGCATGGGGAGTGGGGTCTTGTGTGACTCTTCAGTGGGGCTCCCTGTCTAAGTGGTAAGGTGGGGATTGTCTCCATCTTTGTCATAATAAAGCTGAGACTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026921-Egfl7:NM_198724:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.249 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCAGGTGTCCTTCTTGGA
R:
TACCACTTAGACAGGGAGCCC
Band lengths:
257-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: