HsaINT1048125 @ hg38
Intron Retention
Gene
ENSG00000241404 | EGFL8
Description
EGF like domain multiple 8 [Source:HGNC Symbol;Acc:HGNC:13944]
Coordinates
chr6:32167503-32168281:+
Coord C1 exon
chr6:32167503-32167656
Coord A exon
chr6:32167657-32167909
Coord C2 exon
chr6:32167910-32168281
Length
253 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TCTGCCATGTCATTAACCAGGCT
3' ss Score
5.12
Exon sequences
Seq C1 exon
TGGGCCGGTCAGGCTGGGGCCTGGGTCAGAGCGGTGCTGCCCGTGCCGCCTGAAGAGCTGCAGCCAGAACAGGTGGCTGAGCTGTGGGGCCGGGGTGACCGGATCGAATCTCTCAGCGACCAGGTGCTGCTGCTGGAGGAGAGGCTAGGTGCCT
Seq A exon
GTGAGTCCTCACACTCCTCCCGCCTTGACTTCTATTCCCCAACTTTCCCCAAGACCCCTCTCCATTCAGGCATTCCCTCTTTCCTCCAAGCCCCTCTCCAACATTCACTATCCTCATGCCTCTCCACTTTACCATCGTTCTCTTCTGAAATCCTGTCCCCAGCCCAACAGTTTCACTTATTGTTTGGTGAGAGTGGCAGTGTAGTCCACTCCAGGCTGACCACAGCCACTGTGTCTGCCATGTCATTAACCAG
Seq C2 exon
GCTCCTGTGAGGACAACAGCCTGGGCCTCGGCGTCAATCATCGATAAGAAGCCTCTACAGCACCCCTGCCCCCTAATTTATACAGAAACCGGACCCACTAATCCTCTGGGATTGGCCGACTGTGAGCTGCAGATAAGGCTATCAGCCACCAAAGAGCAATGAACAATGGAAACTTCAGAGAGCTGAAGAAAGGGGGAGGCCTGTGTTCTTGGCCTGCCCCTGAGTCTTCTGGCTGGGGGCAGGTTGCCTGGGCAAGAACTGCTTCTTCAATTCCTTAACAAATGCAACCACCAACACCCAGATCTCTCTCTCTCTTTATTTTCAGTTTTTTTGCTGTTATCCAGATAATTAATAAAAACCAACCACGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241404:ENST00000395512:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGCTGCAGCCAGAACAG
R:
CCTCCCCCTTTCTTCAGCTCT
Band lengths:
302-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains