BtaINT0054766 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025410 | EGFL8
Description
Bos taurus EGF-like-domain, multiple 8 (EGFL8), mRNA. [Source:RefSeq mRNA;Acc:NM_001099187]
Coordinates
chr23:27024477-27025302:-
Coord C1 exon
chr23:27025149-27025302
Coord A exon
chr23:27024840-27025148
Coord C2 exon
chr23:27024477-27024839
Length
309 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
GTCTCCTTGTCATTAACCAGGCT
3' ss Score
6.18
Exon sequences
Seq C1 exon
TGGGCCGGTCAGGCTGGGGCCTGGGTCCGAGCAGTGCTGCCCGTGCCCCCGGAAGAGCTGCAGCCCGAACAGGTGGCGGAGCTGTGGGGCCAGGGTGATAGGATCGAGTCTCTCAGTGACCAGGTGCTGCTGCTGGAGGAGAGACTGGGCACCT
Seq A exon
GTGAGTCCCCATGGCCCTCTCGGTGGGGACCCCCATCTCCCCACAACTGCCCCCCAGCTCCTCAAAACACCTTTTCCCAACTTTTAAGTTTTCTCTTATCCAAAATCCTTCCTCTGCACCCACTCACCTCATACCTTCCCAGATTTCTGCAGTTCACCACCCCCTCTTTTGGTACCCCGTTCTCCAGCTCAGTGGCGGTTCCACTTATTGTTGAGAGAGGTTGTCAATCTGTTTAGCGTCCAGGGCCCGCTCTAGGCATCCCAGAAATACACAGTCGATTTGTCTGCCTGTCTCCTTGTCATTAACCAG
Seq C2 exon
GCTCCTGTGAGGACAACAGCCTGGGCCCAGGCCTCAAAGGGCGAAGATAAGGAGCCTCTGCAGAGCCCCTGCCCTCTAATTTATACAGAAACTGGACTCACTAATCCTCTGGGATTGGCTGGCTAGGGAGCTGCAGATAAGGCTACTTGCTGCTGAGAAGCCATGGACAATGGAAACCATGCAAAGCTAAAGAATGGAGGAAGGCGGTTGCCACCCCTGAATCCTCGGGCTAGGGCCGATGCCTGGGTGAGAACTGCCTTCTTAACTCCTTAACAAAAACAGCCAGAACATGCTCAGATCTTGCTCAGTCTTTATTCTTGGTTTCTTGCTGTTATCCAGATAAGTAATAAAAATCAACCACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025410:ENSBTAT00000005817:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTCTCTCAGTGACCAGGT
R:
TCTGAGCATGTTCTGGCTGTT
Band lengths:
348-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]