MmuINT0055826 @ mm10
Intron Retention
Gene
ENSMUSG00000015467 | Egfl8
Description
EGF-like domain 8 [Source:MGI Symbol;Acc:MGI:1932094]
Coordinates
chr17:34613354-34613930:-
Coord C1 exon
chr17:34613777-34613930
Coord A exon
chr17:34613582-34613776
Coord C2 exon
chr17:34613354-34613581
Length
195 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
GCCTCTTTGCCATTAACCAGGTG
3' ss Score
7.29
Exon sequences
Seq C1 exon
TGGGCCACACAGGCTGGGGCCTGGGTTCGAGCAGTGCTGCCCATGCCCCCTGAAGAGCTGCGGCCTGAACAGGTGGCTGAGCTTTGGGGCCGGGGTGACAGAATTGAGTCCCTCAGCGACCAGGTGCTGCTACTGGAGGAAAGACTGGGTGCCT
Seq A exon
GTGAGTCCCCTGCTGCTCCTCCTCCATGACTGAAGACCCAGCCTCAAGTTAGCATTTCACTCCTGAAACTCTCCCACACTGTCCTGGTCACCAGACTACTTGCATATTGTTGGGTGACTAAACTAGCAGGGCCCTCCCTCCTGGCCAGGGAGCCCCTCCAGACCTCAGCCACCTTGCCTCTTTGCCATTAACCAG
Seq C2 exon
GTGCCTGTGAGGATAACAGCCTGGGCCCAAGCCTGCGTGGATGACGAGGAATGCCCGCAGCAGCTGGGGTCCCCAACTTACACAGAAGCTACACCTGCTAACCTGGGATCAGAAGATATGGATATCAACCACTGAAGTACAACAGGCCGCAGAGAACCCCACGTCTCTCTTTCTCTTTATTTTCAGTTGCTTGCTGTTATCCAGATAATAAAAACCAACCACACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015467:ENSMUST00000015611:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.179
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAGGTGGCTGAGCTTTG
R:
CTCTGCGGCCTGTTGTACTTC
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types