RnoINT0004972 @ rn6
Intron Retention
Gene
ENSRNOG00000033581 | AABR07044388.2
Description
NA
Coordinates
chr20:4450011-4450960:+
Coord C1 exon
chr20:4450011-4450301
Coord A exon
chr20:4450302-4450669
Coord C2 exon
chr20:4450670-4450960
Length
368 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CGCTTCTCCGTTACTTACAGCCT
3' ss Score
7.52
Exon sequences
Seq C1 exon
TGCTTCAGAGTGACCCTGACTCAGGGTCCCCACCCCGTCTGGGAGAGCTATGGGTGACAGACCCCACCCCACACTCACTGCACCTCTCCTGGACTGTTCTCGGAGGCCAGTTTGACTCCTTCATGGTCCAGTACAGAGACAAGGAAGGCCAGCCCCATGTGGTGCCTGTGGAGGGGCCTGAGCGCTCAGTGGTGATCTCCCCACTGGACCCCAATCACAAGTATAGGTTCACTCTGTTTGGGGTTGCCAATAAGAAGCGGTATGGGCCCCTTACTGCTGATGGCACTACTG
Seq A exon
GTGAGTGACTGCTGCCTTAAGTTCTCTCTCTCATGTGACCTCTTCTTGCTCTCCACATACTCTCACACTCACACACTCACACACTCACACACACACACCACCCTCAGCCAGGAGGCAGCTGAGCCTCCCAACAAAATGGCCGATCCCAACACCTTGGCCCCGTTCCCAGGCTGAGGGGTAGCCAGTTTTCCCTGCACAGCGAGGCCCCTTCCATCCCATTCAGTGTGCTCTCTAAAGCCCAGAAGGTGTGTCATAGTCTGGCTGTGCCCCACTTCCCAGGGCTTTAGTGCTGACCCCAGGTCCAAATCCAAACCCCGATCCTAGGTTCCGGGTTCCGCACCTGACTCACGCTTCTCCGTTACTTACAG
Seq C2 exon
CCTCAGAGCCGAAAGAGGAGTCCTCGGAGCCGCCCCGCCTCGGCGAACTGACTGTAACTGGTGTGACCCCAGACTCCCTGCGCCTGTCCTGGACAGTGGCCCGGGGTCCCTTCGACTCCTTTGTGATCCTTTACAAGGATGCACAGGGCCAGCCCCAGAGCGTGCCCATCGAGGGGGATGAGAATGAGGTCACTGTCCCCGGCCTGGAATCCAACAGGAAGTATAAGATGAACCTCTACGGGCTTCGTGGCAGGCAGCGTGTGGGGCCGGTGTCTGTAGTGGCCAAAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033581:ENSRNOT00000077635:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACTCTGTTTGGGGTTGCC
R:
TTTTGGCCACTACAGACACCG
Band lengths:
352-720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]