HsaINT1044864 @ hg38
Intron Retention
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:HGNC:11976]
Coordinates
chr6:32081368-32082326:-
Coord C1 exon
chr6:32082036-32082326
Coord A exon
chr6:32081674-32082035
Coord C2 exon
chr6:32081368-32081673
Length
362 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTGGATCTCCTTGTTTACAGCTC
3' ss Score
7.36
Exon sequences
Seq C1 exon
TGCCTCAGAGTGACCCAAGTCCAGGGACTCCACCCCACCTGGGAAACCTGTGGGTGACAGACCCTACCCCAGATTCACTGCACCTCTCCTGGACTGTCCCTGAGGGCCAGTTTGACACCTTCATGGTCCAGTACAGGGACAGGGATGGACGGCCCCAGGTGGTACCTGTGGAAGGGCCCGAGCGTTCATTTGTTGTCTCCTCACTGGACCCTGACCACAAGTACAGATTCACTCTGTTTGGAATTGCGAACAAGAAGCGGTATGGCCCCCTCACGGCCGATGGCACCACTG
Seq A exon
GTGAGTAGCAGCCACCTCAGCCCCCATGTGACCCCTTCTCAGCCCCATGCACACTTCCCTTCAGCCCAAAACCAGCTGGGGTCCCCCAGCAAGACAGCTGACTCCAGCTTCCCGGCCCCACTCCAGGGCTGAGGGGCAGCCAGACTCCCCCGCACTGCTGGGCCCCTTCCATCCCAAGCAGCAGCTCCCCGTGGCCCAGAAGGTGTGTCATACCCTGGCTGTGTCAGGCTTCCCAGAAGTTTAGCACTCGAATTAATGGACTAGTGACCCCCCACCCCCCATAGGTGTGACATCCCGTCGAAACCCCAAGCCCCAGTCCCAGGCTGCCAGTTCAGCACCTGGCTGGATCTCCTTGTTTACAG
Seq C2 exon
CTCCAGAGAGGAAAGAGGAGCCCCCCCGCCCTGAGTTCCTGGAGCAGCCCCTCCTGGGGGAACTGACAGTGACCGGCGTGACCCCAGACTCCTTGCGTCTCTCATGGACAGTGGCCCAGGGCCCCTTCGACTCATTCATGGTCCAGTACAAGGATGCACAGGGGCAGCCCCAGGCAGTGCCTGTTGCGGGGGATGAGAATGAGGTTACTGTCCCCGGCCTGGATCCCGACCGGAAGTATAAGATGAACCTCTACGGGCTTCGTGGCAGGCAGCGTGTGGGGCCCGAGTCTGTGGTGGCCAAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477:ENST00000375244:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=NA C2=0.680
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=83.7)
A:
NA
C2:
PF0004116=fn3=WD(100=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCTGGACTGTCCCTGAG
R:
CATGAATGAGTCGAAGGGGCC
Band lengths:
348-710
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains