RnoALTD0002207-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000000437 | Agpat1
Description
1-acylglycerol-3-phosphate O-acyltransferase 1 [Source:RGD Symbol;Acc:1303287]
Coordinates
chr20:4369502-4375440:+
Coord C1 exon
chr20:4369502-4369602
Coord A exon
chr20:4369603-4370034
Coord C2 exon
chr20:4375241-4375440
Length
432 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTGGCTCTTCCCGTCCACAGGTG
3' ss Score
12.43
Exon sequences
Seq C1 exon
GAGCAGAACTGGGGTTAGCCCGACGTGTGGATGGTGCGGCCGTCGGCCAGTAGCGCTGGTGTTAACCCCACTCTCTCGGTTGGACCGCTCGGCCTCTCTAG
Seq A exon
GTGATTCTCACAGCAGGACCGAGCCCAAGGCCCACCGTTGTGATGTGACCCAGCAGACCACAGTGGACCTCAACTCCGTTCTAGACCTTAAAAGCAGAAAAGGACTGACTGGTTCCACCCCCTTATGAGTGGGCGCCCAAAGGGCAGGGTCCGATCCCTAGGTGACCCGCCGCAGGATGGAGTAGATCCGCCCCTTCCTTGTAATTTGCCCTGCAGAGATTTGGATCTTCTTCCTGGCTGAACCGTTCCAACAGTCAGTGACCCTCACTGTGGCCCAAGGCCCAGAATTAGGTAACAGTCCTCTCACTACCGAGGGCTCTTCACCAAGCCACGTAAACCCAGGGCAAAGGTGTCCATGGGCGGGAGACAAGAACAAGCTAGCTAAGGATTATCCGATACCTTTAAAAGGGCCTGTGTGACTGAGGAATAAAG
Seq C2 exon
GTGACCAGAATGGAGCTGTGGCCCGGGGCCTGGACGGCGCTGCTGCTGCTGCTCCTCCTCCTGCTGTCCACCCTGTGGTTCTGCAGCTCCAGTGCCAAGTATTTCTTCAAGATGGCCTTCTACAATGGTTGGATCCTCTTCCTGGCAATACTCGCGATCCCTGTGTGCGCCGTTCGAGGACGCAATGTCGAGAACATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000437-0-7,1-7,2-7-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGAACTGGGGTTAGCC
R:
TGTTCTCGACATTGCGTCCTC
Band lengths:
297-729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]