RnoINT0067142 @ rn6
Intron Retention
Gene
ENSRNOG00000000441 | Gpsm3
Description
G-protein signaling modulator 3 [Source:RGD Symbol;Acc:1303014]
Coordinates
chr20:4355175-4355912:+
Coord C1 exon
chr20:4355175-4355591
Coord A exon
chr20:4355592-4355809
Coord C2 exon
chr20:4355810-4355912
Length
218 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACATCTCTTGGTATCTATAGAGT
3' ss Score
5.81
Exon sequences
Seq C1 exon
GGAGGTGGGGACAGAGGAGCAGTGGGGCAGGCTAAGGGGTTACTGAGGCTCTGGAGATGAGACGGCAGGAATCCGCCCGTCAGGAGCACACTCCACTCCTGCAGCTGGAATTTCTCCCAGTCTCTGTCCTCCCCTGGGGCAAGAGAGGTCAAGCGAGCTGTTTGGGTGGGAAAAAGCGAGGATGGAGGAAGTTGACAGAGATGGGCGGGGCCCGTGGGGGGGCTGACCAACAACCCAGCTTCCTGCTCAGTACCTAGGCATCCAGCCCCCAGCTCACCCCCACCCCTTCCAGACCCCATTCCCCTCAGGAACCCAAGGTTCCAGTCCTCCTCCCAAATTCCAGCCACCCCTCCCCATCAGTGTCTCTCCCCAAGTCCAGGGATGGAGGCTGAAAGACCCCAGGAAGATGGTGAGCAG
Seq A exon
GTGAGCTGCTGGGTTGCCGGGCTGGGGGACCAACCCAGGGAGAAGGGACATGTGGGGGCCTAGAGCAGAATCCCAGTGAGCAGTGGACTCAGGAGACTTGGGAAAGTTTGGGCGCACCAAGACAGGAACAGACACACAGGGGAAATGGGTCACTGGCCTAGCCCTCCGCGAGCGCATACACACCCCTGACTGGAATGAACATCTCTTGGTATCTATAG
Seq C2 exon
AGTCTCCCTCAGGATGATCAGGGCTGGCCCCCTGTGAACTCCACCGCTCGGCCTTGGAGATCTGCACCTCCCTCCCCTCCTCCTCCTGGAACCCGACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000441:ENSRNOT00000000510:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTTGACAGAGATGGGCGG
R:
GGAGGGAGGTGCAGATCTCC
Band lengths:
305-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]