HsaINT1014799 @ hg38
Intron Retention
Gene
ENSG00000213654 | GPSM3
Description
G-protein signaling modulator 3 [Source:HGNC Symbol;Acc:HGNC:13945]
Coordinates
chr6:32192148-32192906:-
Coord C1 exon
chr6:32192472-32192906
Coord A exon
chr6:32192251-32192471
Coord C2 exon
chr6:32192148-32192250
Length
221 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGGACATATTTTGGCATCAGGGC
3' ss Score
4.04
Exon sequences
Seq C1 exon
GAAAGAGCAGAAGAGGAGGTGGGGTGGAGGGAGCAGAGCCAGGGATTAGGGGACTACTGAGGCTCTGGAGATGAGACCGCCAGGAGTCCTTCCCCACCATGAGCCCCCTCCACTCCTGCAGCTGGAGGAGTTTTTCCCAGTCTCAGTGCTGCCCTGGGGCGAGAGAGACTGAACAAGCTGTTTGGGTGGGAAGAGAATGGAGGAAGTTGACAGGGATGGGCGGGGCCCGTGGGGGGGCTGACCAGGAACCCAGCTTCCTGCTCAGTACCCAGGCATCCAGCCCCCAGCTCACCCCCACCCCTTCCAGCCCCCACTCCCCTCAGGAACCCAAGGTTCCAGCCCTCCTCCCAAATCCCAGCCACCCCTCCCCCACCAGTTTCTCCCCTCTAGGGGATGGAGGCTGAGAGACCCCAGGAAGAAGAGGATGGTGAGCAG
Seq A exon
GTGAGCTGGGCACGGGGTTGGGGAGGCTGACACTGGGAAAGAAGGGAGGTGAGAGGACCTGGGGCAGAAATGTAGGGACACAGGGGCCTTGAAAGGCTTGGGCAAACTGAGGCAGGAACAGAGACACACAGAGAGGAAACGGGCCACTGGCCTAGCCCCCTGTCCACTCCTCCCGCTTCAACCACCACTGCTTGACTAGAATGGACATATTTTGGCATCAG
Seq C2 exon
GGCCCCCCTCAGGATGAGGAAGGCTGGCCCCCTCCAAACTCCACCACTCGGCCTTGGCGATCTGCTCCTCCATCCCCTCCTCCTCCAGGGACCCGCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213654:ENST00000375040:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.830 A=NA C2=0.894
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGGAAGAGAATGGAGGA
R:
GAGTGGTGGAGTTTGGAGGGG
Band lengths:
301-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains