MmuEX6077104 @ mm9
Exon Skipping
Gene
ENSMUSG00000015468 | Notch4
Description
Notch gene homolog 4 (Drosophila) [Source:MGI Symbol;Acc:MGI:107471]
Coordinates
chr17:34720774-34721795:+
Coord C1 exon
chr17:34720774-34720949
Coord A exon
chr17:34721357-34721576
Coord C2 exon
chr17:34721726-34721795
Length
220 bp
Sequences
Splice sites
3' ss Seq
GACTGTCTCTCTCTTACCAGGGC
3' ss Score
11.28
5' ss Seq
TAAGTGAGA
5' ss Score
2.17
Exon sequences
Seq C1 exon
GTTTGTGGTAGTGATGGGAGTGGATCTGTCCCGCTGTGGTCCGGAACATCCTGCGTCCCGCTGCCCCTGGGACTCTGGACTCCTGCTGCGCTTCCTTGCAGCAATGGCAGCAGTGGGAGCTCTGGAGCCCCTGCTGCCTGGACCCTTGCTGGCGGCTCACCCTCAAGCAGGGACCA
Seq A exon
GGCCCTCTGCCAACCAGCTTCCCTGGCCCATTCTATGTTCACCAGTGGTTGGGGTGCTTCTCCTGGCCCTTGGGGCCCTTCTCGTCCTCCAGCTCATTCGGCGACGGCGACGAGAACATGGGGCCCTGTGGCTGCCCCCTGGTTTCATTCGAAGGCCTCAGACACAGCAGGCACCCCACCGGCGGAGGCCCCCACTGGGCGAGGACAACATTGGTCTTAA
Seq C2 exon
GGCACTGAAGCCAGAGGCCGAAGTGGATGAGGATGGAGTGGCCATGTGCTCGGGCCCTGAAGAGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015468-'27-28,'27-26,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.297 C2=0.833
Domain overlap (PFAM):
C1:
PF076847=NODP=FE(92.2=100)
A:
PF076847=NODP=PD(3.1=2.7)
C2:
PF076847=NODP=PD(2.3=33.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTAGTGATGGGAGTGGA
R:
CTCTTCAGGGCCCGAGCA
Band lengths:
237-457
Functional annotations
There are 1 annotated functions for this event
PMID: 16530045
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: inferred by author. ELM ID: ELMI002960; ELM sequence: LWLP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: