BtaINT0103029 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012121 | NOXA1
Description
Bos taurus NADPH oxidase activator 1 (NOXA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102075]
Coordinates
chr11:105702634-105702915:-
Coord C1 exon
chr11:105702801-105702915
Coord A exon
chr11:105702722-105702800
Coord C2 exon
chr11:105702634-105702721
Length
79 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
TAACGACCCAACGCCCACAGTGG
3' ss Score
2.66
Exon sequences
Seq C1 exon
GGAGTGGGCGGCCGGCCGGTCCTCTACCAGGTGGTGGCCCAGCACGTCTATTCTGCCCAGAGGCCCGAGGATCTGGCCTTGCAGCCAGGAGACACCGTGGATGTCCTGTGTGAAG
Seq A exon
GTAGAGCCTGCGCTGCCCGGGCCGGGGGGTGCCCGACCAGGGTCTGCACACAGACGCAGTAACGACCCAACGCCCACAG
Seq C2 exon
TGGACCAGGCGTGGCTGGAGGGCCACTGTGACGGCCACATTGGCATCTTCCCCAAGAGTTTCACTGTCCCAGCTGCGCGGCGCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012121:ENSBTAT00000066207:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056419=PB1=PD(1.3=2.6),PF0001823=SH3_1=PU(58.7=69.2)
A:
NA
C2:
PF0001823=SH3_1=PD(39.1=60.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCCAGCACGTCTATTC
R:
GGGACAGTGAAACTCTTGGGG
Band lengths:
152-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development