MmuINT0109922 @ mm10
Intron Retention
Gene
ENSMUSG00000036805 | Noxa1
Description
NADPH oxidase activator 1 [Source:MGI Symbol;Acc:MGI:2449980]
Coordinates
chr2:25085667-25086087:-
Coord C1 exon
chr2:25085973-25086087
Coord A exon
chr2:25085855-25085972
Coord C2 exon
chr2:25085667-25085854
Length
118 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CACCCAACATGTCTCCACAGTGG
3' ss Score
6.82
Exon sequences
Seq C1 exon
GGGGTCTGGGGCCGGCCAGTCCTCTACCAAGTAGTAGCTCAGTACAACTATCGTGCCCAAAGACCGGAGGATTTGGACTTCCACCAAGGGGACACGGTGGATGTCCTGTGTGAAG
Seq A exon
GTAAAAGGCTGCCCTTTCCTGCCCGACACTACTGGCTTGCCCAGGCCTGGTGGGGACTCTGCTCTCTAGGGCTCAGTCTTTGTTGTAAGCATACACAGCACCCAACATGTCTCCACAG
Seq C2 exon
TGGACGAAGCATGGCTGGAGGGACACCGAGATGGCTGCGTTGGCATTTTCCCTAAGTGCTTTGTGGTCCCAGCTGGCGCCTATGTGGAAGCCATGCTTGTACTGGGACCCCAGCCAGGAGACCAGAACTAGCAATAAATACCATGACAAAACCAGCTTTAATTAAACAAGCAAACAAGCAAACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036805:ENSMUST00000044018:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0056419=PB1=PD(1.2=2.6),PF0001823=SH3_1=PU(58.7=69.2)
A:
NA
C2:
PF0001823=SH3_1=PD(39.1=40.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCAGTCCTCTACCAAGTA
R:
ATTTATTGCTAGTTCTGGTCTCCTGG
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types