BtaINT0103033 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012121 | NOXA1
Description
Bos taurus NADPH oxidase activator 1 (NOXA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102075]
Coordinates
chr11:105706707-105707208:-
Coord C1 exon
chr11:105707074-105707208
Coord A exon
chr11:105706815-105707073
Coord C2 exon
chr11:105706707-105706814
Length
259 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GCTGCCCTGGCCCCCTCCAGAAG
3' ss Score
5.96
Exon sequences
Seq C1 exon
GTGCTGTTCAACATGGCTGCGGTGCAGAGCCAGCTGGGGCTCTGGGCAGAGGCTGCCTGCAGCCTGGGGGACGCCATCTCCAAGGGGCCGGAAGGGGCCCGCAACGGCCTGGACGTCGCCCTGGGCCAAGTGCAG
Seq A exon
GTAAGGGACGGGCAAGGGGAGCCAGGCTCCTGAGCTGACTCGGGGGGCTTGCCAGGCCCACAGCCTACAGGTTTGGGGCTCACATTCATCTAGCCCCCCAAGACCAACTATATGAGATAAAGAAACGTCTGGAGGTAGGGGACCCATGTGCCTTGCAGGGGGTTGGCCTCCCACAGGCCATGGGAGCTGGGGAGTGGGCCGTCCTGCTCTGAGGCCCCGGGTGGCTCCCGGCGCTCAGGGCTGCCCTGGCCCCCTCCAG
Seq C2 exon
AAGCAGGTCCCCCTGCAGCCTCGGCAGGTCCCCAGGGGTGAGGTCTTCCGGCCCCATAGGCGGCACGTGGAGCACCTGGAGCCTGTGGATTTCCTGGGCAAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012121:ENSBTAT00000066207:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGTTCAACATGGCTGC
R:
CTTGCCCAGGAAATCCACAGG
Band lengths:
237-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development