GgaINT0125104 @ galGal3
Intron Retention
Gene
ENSGALG00000008952 | NOXA1
Description
NA
Coordinates
chr17:1299230-1300524:+
Coord C1 exon
chr17:1299230-1299364
Coord A exon
chr17:1299365-1300416
Coord C2 exon
chr17:1300417-1300524
Length
1052 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATCTTCTTCCCACGCCCTAGAAT
3' ss Score
6.27
Exon sequences
Seq C1 exon
GTGCTGTACAGCACTGCTGCCACGCAGTGCCGGCTGCAGCAGTGGCAGGAGGCCAGAGACACCCTAGAGAAGGCCGTCGTGTGGAGACCTGAAGGAAGATCAGCAACACTGGCCCTGGCCCTTGAGCGAGTGCAG
Seq A exon
GTAAGACTGCCTCTGTGGGTTCCTGGGGAAGTGCTTTGGGCTCAAGCTGAGGAGTCCAAGATAAGAATATGCAGAATGTTTTATGTCTTTGGGTTTTCTTGCCTACCCACCAGTTTGGTCACCTGATGACACTCTAAGCAATTTCTTTGTGATGCTCTACCAAGCTTCAGCTAACCTAGTAACTCTGTCACCTCCAGGAGCTTCATAGAATAGAAACACCAGAGCTGGGAGTTATGGGCTAACCTTTCAGTTTGAAGTCGGTACTTTCTAGACCCTGCTGTTCGGGAGCTCAGTTGTATTCATACTCGCACTGTGAAACAAGTTGCCTCGTGGAGTGTTTAAATGCAGATTTGGAGAGTTTCACTTTTCACAAAGCTGGCAGACTTCTTTGAATCCCTTTGGCTTTGGTGACAATTGGTAGCAGCTCAGACATTAATGACAATCATGTTTAGAGCTTAAGTAAAGTGCAAACGTGTTTATGGAGATGATTCTACATAATAGTTTCCTGTTAAGACTCTTTTATGATTAGGAACGAGTTACAGCTATCTGATTTACTTTCCCTGGAGGGTTCATTATTTTGTTGCCTCCATACTTCCTTGTTTTGTTTGTCTCCTTTCTAAAGAGTTATCACTTTATTAGTCCAGTCATCTCCTCTAGCATCATATTTGTGCTTTACATTAGTGTATGATTTATATTCACTGTTTTCATGCTCCTCAGCTGTTGCACAGACTGACCCAACAAAATATCTGAAATCAACTAGAAAAATGTAGAGATTTGTTTAACAGATGTTACTCCACTGCCCTCCCTCCACACCCCTCCCATGCTGACAGTCAGCCTTTGACTCAATACCAGGCAATGGCTGCTGGGCTTTTATTTTTCATGTGCTTGTTAAAACTTAGTGACCTTTGTCAAGTTCACAGCTTTATTTTTTGCCCCGATGTCTTCCTGGAGCTGATCTCTCTCACACAGAAGCAATATTTGCTTTTCACTGCTGCTGTGTTTCATTTAATATTAACTGATGGTTTTTCCTTTATCTTCTTCCCACGCCCTAG
Seq C2 exon
AATCATCAATTTTTAGAGCCTATGCAGGTTCCCCCTGGGGAATTTTTCAGACCACGAAAGAAGGAAGTTGAACAGCTGGATTCAAAAGATTTCCTGGGTAAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008952:ENSGALT00000014558:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCAGTGGCAGGAG
R:
GGTTTACCCAGGAAATCTTTTGAA
Band lengths:
206-1258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]