BtaINT0103578 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014236 | NR2E3
Description
Bos taurus nuclear receptor subfamily 2, group E, member 3 (NR2E3), mRNA. [Source:RefSeq mRNA;Acc:NM_001167900]
Coordinates
chr10:18632352-18632773:+
Coord C1 exon
chr10:18632352-18632478
Coord A exon
chr10:18632479-18632669
Coord C2 exon
chr10:18632670-18632773
Length
191 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GGGCTCCCCTCCACCCGCAGGTG
3' ss Score
11
Exon sequences
Seq C1 exon
GCGTGGGCCCCTCGCTCCAGTGCCGCGTGTGTGGGGACAGCAGCAGCGGGAAGCACTATGGCATCTACGCCTGCAACGGCTGCAGCGGCTTCTTCAAGAGGAGCGTGAGGCGAAGGCTCATCTACAG
Seq A exon
GTGAGAGAGGGGGCCCCCCACCCCAGAGGAGTCCCCCCTCATCTAGAAGAGCCCCGCCGGCCACTGAGTGTTCTGGGAGGGAGGGAGTGGAGGATGCTCAGGGGAGAAGGGGCTGCAGCCAAAGTGTCTGAAACCCACGGCCCAGGGCCCGGGCAGGACCCTGACTCCCTGGGGCTCCCCTCCACCCGCAG
Seq C2 exon
GTGCCAGGTGGGGGCAGGGATGTGCCCGGTGGACAAGGCCCACCGCAACCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCTTGCAGGCGGGCATGAACCAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014236:ENSBTAT00000018926:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(52.1=86.0)
A:
NA
C2:
PF0010513=zf-C4=PD(46.5=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGTGCCGCGTGTGT
R:
CATCCTGGTTCATGCCCGC
Band lengths:
217-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development