MmuINT0110508 @ mm9
Intron Retention
Gene
ENSMUSG00000032292 | Nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:MGI Symbol;Acc:MGI:1346317]
Coordinates
chr9:59796732-59797115:-
Coord C1 exon
chr9:59796989-59797115
Coord A exon
chr9:59796836-59796988
Coord C2 exon
chr9:59796732-59796835
Length
153 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
3' ss Seq
GGAGCTCGTGTCCTCTGCAGGTG
3' ss Score
7.91
Exon sequences
Seq C1 exon
GTGTGGGCCCCTCGCTCCAGTGCCGAGTGTGTGGGGACAGCAGCAGTGGGAAACATTATGGCATCTATGCCTGCAATGGCTGCAGTGGCTTCTTCAAGAGGAGTGTGAGAAGGAGGCTCATCTACAG
Seq A exon
GTGCCACAGCTCTGCCGGCCTGCCCCGGTGTGCCTAGCACGGGTGGAGGGCGTTCAGGGAAAGCGGAAGACGAGACCAGGGCAAACATATCCCAAGTCAAGGCCTAGAGTCAGGGCATGACACTGCCCCCCCAGGAGCTCGTGTCCTCTGCAG
Seq C2 exon
GTGCCAAGTCGGGGCAGGGATGTGCCCAGTGGATAAGGCCCATCGCAATCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCTTACAAGCAGGCATGAACCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032292-Nr2e3:NM_013708:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(52.1=86.0)
A:
NA
C2:
PF0010513=zf-C4=PD(46.5=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCTCCAGTGCCGAGT
R:
TCTTGGTTCATGCCTGCTTGT
Band lengths:
219-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: