MmuEX0032275 @ mm9
Exon Skipping
Gene
ENSMUSG00000032292 | Nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:MGI Symbol;Acc:MGI:1346317]
Coordinates
chr9:59796410-59808466:-
Coord C1 exon
chr9:59808406-59808466
Coord A exon
chr9:59796989-59797115
Coord C2 exon
chr9:59796410-59796835
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCCCTGCCTTCTTGCTCAGGTG
3' ss Score
8.48
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
TCCCATCTTCCGGCAGTGAATGGCACACCACATGAGTCAACGTGTCAGAACGGATGTTAAG
Seq A exon
GTGTGGGCCCCTCGCTCCAGTGCCGAGTGTGTGGGGACAGCAGCAGTGGGAAACATTATGGCATCTATGCCTGCAATGGCTGCAGTGGCTTCTTCAAGAGGAGTGTGAGAAGGAGGCTCATCTACAG
Seq C2 exon
GTGCCAAGTCGGGGCAGGGATGTGCCCAGTGGATAAGGCCCATCGCAATCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCTTACAAGCAGGCATGAACCAAGATGGTGAGTGGTGGGCACGGTGAAGTGGGAAAGGCAGGAGAGAAAATGGCATCACTGCCAAGGGGCAGGTGCGTGTGTGTCCTGAGTCTCCCTGCTTTCCAAGCTGTGCAGAATGAGCGCCAACCTCGGAGCATGGCTCAGGTCCACCTGGATGCCATGGAAACAGGCAGTGACCCCCGATCAGAACCAGTGGTAGCCTCTCCTGCTCTGGCAGGGCCCAGTCCCCGGGGCCCCACGTCTGTGTCTGCAACCAGAGCCATGGGCCACCACTTTATGGCCAGCCTTATCACCGCCGAAACTTGTGCTAAACTGGAGCCAGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032292-'0-8,'0-7,2-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.514
Domain overlap (PFAM):
C1:
NA
A:
PF0010513=zf-C4=PU(52.1=86.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACACCACATGAGTCAAC
R:
GGAAAGCAGGGAGACTCAGGA
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: