HsaEX6075605 @ hg38
Exon Skipping
Gene
ENSG00000278570 | NR2E3
Description
nuclear receptor subfamily 2 group E member 3 [Source:HGNC Symbol;Acc:HGNC:7974]
Coordinates
chr15:71810554-71811869:+
Coord C1 exon
chr15:71810554-71810861
Coord A exon
chr15:71811483-71811609
Coord C2 exon
chr15:71811766-71811869
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCCCCTGCCCCTCAGGCG
3' ss Score
8.41
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGAAATCTCCTCAAGCCAGAGCCTGTGCTGTGAGGGGCTTCGGGACCTTGGGGCAGCTCCTGAGTTCAGACAGAGTTCAGGAAGGGAGACAGGGGCACAGAGAGACAGAGGTTCATGGACTGAGGCAAAGGCTGGGCCAGGCTCAGCAACCCAGGCCTCCCGCAGGCAGGCAGAGGCTGCCCTGTAACCCATGGAGACCAGACCAACAGCTCTGATGAGCTCCACAGTGGCTGCAGCTGCGCCTGCAGCTGGGGCTGCCTCCAGGAAGGAGTCTCCAGGCAGATGGGGCCTGGGGGAGGATCCCACAG
Seq A exon
GCGTGAGCCCCTCGCTCCAGTGCCGCGTGTGCGGAGACAGCAGCAGCGGGAAGCACTATGGCATCTATGCCTGCAACGGCTGCAGCGGCTTCTTCAAGAGGAGCGTACGGCGGAGGCTCATCTACAG
Seq C2 exon
GTGCCAGGTGGGGGCAGGGATGTGCCCCGTGGACAAGGCCCACCGCAACCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCCTGCAGGCGGGGATGAACCAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000278570-'7-13,'7-12,10-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.450 A=0.000 C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
PF0010513=zf-C4=PU(52.1=86.0)
C2:
PF0010513=zf-C4=PD(46.5=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCACAGAGAGACAGAGGTT
R:
CTTGTCCACGGGGCACATC
Band lengths:
253-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains