BtaEX6051315 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014236 | NR2E3
Description
Bos taurus nuclear receptor subfamily 2, group E, member 3 (NR2E3), mRNA. [Source:RefSeq mRNA;Acc:NM_001167900]
Coordinates
chr10:18631676-18632773:+
Coord C1 exon
chr10:18631676-18631817
Coord A exon
chr10:18632352-18632478
Coord C2 exon
chr10:18632670-18632773
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAGCCCAGGCTTGCCCTTAGGCG
3' ss Score
0.8
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCAGGCACTGGCTGCCCTGGGACCTGCCAGGACAGGCCGACAGCGCCCATGAGCTCCAACGTGGCTGCAGCGGTGCCGGCTGCCGTGTCCGCCTCCAGGAAGGAGTCTCCAGGCAGGTGGGGCCTGGGGGAGGAGCCGACAG
Seq A exon
GCGTGGGCCCCTCGCTCCAGTGCCGCGTGTGTGGGGACAGCAGCAGCGGGAAGCACTATGGCATCTACGCCTGCAACGGCTGCAGCGGCTTCTTCAAGAGGAGCGTGAGGCGAAGGCTCATCTACAG
Seq C2 exon
GTGCCAGGTGGGGGCAGGGATGTGCCCGGTGGACAAGGCCCACCGCAACCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCTTGCAGGCGGGCATGAACCAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014236-'0-1,'0-0,3-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
PF0010513=zf-C4=PU(52.1=86.0)
C2:
PF0010513=zf-C4=PD(46.5=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGCTGCCCTGGGAC
R:
CATCCTGGTTCATGCCCGC
Band lengths:
241-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]