MmuEX0032275 @ mm10
Exon Skipping
Gene
ENSMUSG00000032292 | Nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:MGI Symbol;Acc:MGI:1346317]
Coordinates
chr9:59948925-59949918:-
Coord C1 exon
chr9:59949818-59949918
Coord A exon
chr9:59949182-59949308
Coord C2 exon
chr9:59948925-59949028
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCCCTGCCTTCTTGCTCAGGTG
3' ss Score
8.48
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
GCAAGCAGGCTACCCTTAGGACCATCCATATCCGATGAGCTCTACAGTGGCTGCCTCCACTATGCCTGTGTCTGTGGCGGCCTCCAAGAAGGAGTCTCCAG
Seq A exon
GTGTGGGCCCCTCGCTCCAGTGCCGAGTGTGTGGGGACAGCAGCAGTGGGAAACATTATGGCATCTATGCCTGCAATGGCTGCAGTGGCTTCTTCAAGAGGAGTGTGAGAAGGAGGCTCATCTACAG
Seq C2 exon
GTGCCAAGTCGGGGCAGGGATGTGCCCAGTGGATAAGGCCCATCGCAATCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCTTACAAGCAGGCATGAACCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032292-'2-8,'2-6,5-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NA
A:
PF0010513=zf-C4=PU(52.1=86.0)
C2:
PF0010513=zf-C4=PD(46.5=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCAGGCTACCCTTAGGA
R:
TCTTGGTTCATGCCTGCTTGT
Band lengths:
203-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types