DreEX6102535 @ danRer10
Exon Skipping
Gene
ENSDARG00000045904 | nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:ZFIN;Acc:ZDB-GENE-041114-63]
Coordinates
chr25:22177094-22177965:+
Coord C1 exon
chr25:22177094-22177483
Coord A exon
chr25:22177623-22177773
Coord C2 exon
chr25:22177862-22177965
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTGTGTTCCTCTAGGTA
3' ss Score
12.9
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGCCTCAGAGTCACTCACTGTCCGGCATCGCTAGACATACCAGGAGGAGGTGACAAACCTCCCTGCACTTTACAAAAGCTACAGACAAGAAGTTCTGCAGGACAGAGATACCCAGAGTCAAGAGCGGACCATCAGGATAGAGACTAAAGGATCTTGAAGAAACATCTAACAAGGAGTGACGGATCTCTTTGAGGACCCTCTAGGATTCTAGTTAACCTATCTGGGACACATATTCTAGCCTCAAAACTTTTGAGGGTGCACTTCAGGAAGAGTCTGCGTAAACTTTTACACCACCTTCAATGGAGGATCCGATGTCAGAAATGTCCATGGTACCGTTTTCATCACCAACAGAATCTTCCAGAAGCAACTCCACAGATGACAGCCAAGACG
Seq A exon
GTAAAAGCCCAGCTCCTGGAAAGGTCCTGAACACGGGACTTCTTTGTAAAGTGTGTTCTGACACCAGCAGTGGGAAACACTATGGAATATACGCTTGCAACGGTTGCAGTGGCTTTTTCAAGCGCAGTGTGAGGCGCAGACTCATCTACAG
Seq C2 exon
ATGTCAGGCTGGTACAGGCATGTGTCCTGTGGATAAAGCCCATCGAAATCAGTGCCAGGCCTGTCGCTTAAAGAAATGCCTTCAAGCTGGAATGAACAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045904-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.098 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
PF0010513=zf-C4=PU(52.1=72.5)
C2:
PF0010513=zf-C4=PD(46.5=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATCTCTTTGAGGACCCT
R:
CACAGGACACATGCCTGTACC
Band lengths:
243-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]