GgaEX1040291 @ galGal4
Exon Skipping
Gene
ENSGALG00000002093 | NR2E3
Description
photoreceptor-specific nuclear receptor [Source:RefSeq peptide;Acc:NP_989925]
Coordinates
chr10:896000-897903:+
Coord C1 exon
chr10:896000-896072
Coord A exon
chr10:897206-897356
Coord C2 exon
chr10:897800-897903
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTTGGCTCCGCTCCTGCAGGAC
3' ss Score
10.07
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CGGGGACAGCCCAGCATGGCTGCGTCGCCGGCGGGGTCGGTGGTGAGCGCCGGGCTAGAGGACAGCCCCTCGG
Seq A exon
GACTGAACCCAGCCCCTGGCAAGGCACTGAGCCCCGTACTGCTGTGCAAGGTGTGCGGGGACACCAGCAGTGGGAAGCACTACGGCATCTATGCCTGCAATGGCTGCAGTGGCTTCTTCAAGCGCAGCGTCCGCAGGAAGCTCATCTACAG
Seq C2 exon
GTGCCAGGCAGGGACGGGGCTGTGCCCAGTGGACAAGGCACACCGCAACCAGTGCCAGGCATGCCGGCTCAAGAAGTGCCTGCAAGCCGGCATGAACAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002093-'1-1,'1-0,2-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.039 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
PF0010513=zf-C4=PU(52.1=72.5)
C2:
PF0010513=zf-C4=PD(46.5=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGGGCTAGAGGACAG
R:
CATCCTTGTTCATGCCGGCTT
Band lengths:
130-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]