RnoINT0102968 @ rn6
Intron Retention
Gene
ENSRNOG00000050690 | Nr2e3
Description
nuclear receptor subfamily 2, group E, member 3 [Source:RGD Symbol;Acc:2318602]
Coordinates
chr8:64799513-64799876:-
Coord C1 exon
chr8:64799750-64799876
Coord A exon
chr8:64799617-64799749
Coord C2 exon
chr8:64799513-64799616
Length
133 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
3' ss Seq
GGAGCTTGTGTCCTCTGCAGGTG
3' ss Score
8.67
Exon sequences
Seq C1 exon
GTGTGGGTCCCTCGCTCCAGTGCCGAGTGTGTGGGGACAGCAGCAGTGGGAAGCACTATGGCATCTATGCCTGCAATGGCTGCAGCGGCTTCTTCAAGAGGAGTGTGAGACGGAGGCTCATCTACAG
Seq A exon
GTGCCACCAGCCCTGCGGGCCTGCCCCGGGATGCCTAGCACAGGTGGAGGGTGTTCCGGGAAAGCGGAAGCCCCAACTCAAAGCCTAAAGTCAGGGCATGACACTGGCCCCCAGGAGCTTGTGTCCTCTGCAG
Seq C2 exon
GTGCCAGGTAGGGGCAGGAATGTGCCCAGTGGATAAGGCCCATCGAAACCAGTGCCAGGCCTGCCGGCTGAAGAAGTGCTTACAAGCAGGCATGAACCAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050690:ENSRNOT00000073122:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(52.1=86.0)
A:
NA
C2:
PF0010513=zf-C4=PD(46.5=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTCCCTCGCTCCAG
R:
TCTTGGTTCATGCCTGCTTGT
Band lengths:
227-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]