BtaINT0103606 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001864 | NR4A3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:HGNC Symbol;Acc:HGNC:7982]
Coordinates
chr8:65341202-65345929:+
Coord C1 exon
chr8:65341202-65342185
Coord A exon
chr8:65342186-65345799
Coord C2 exon
chr8:65345800-65345929
Length
3614 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTGTATTGTATTTCCTCAGAGA
3' ss Score
8.43
Exon sequences
Seq C1 exon
ATGCCCTGCGTGCAAGCCCAGTATAGCCCTTCACCGCCAGGTTCCAGTTATGCAGCACAAACATATGGCTCGGATTACACCACGGAGATCATGAATCCTGACTACGCCAAGCTGACCATGGACCTTGGCAGCACCGAGATCACCGCCACAGCCACCACGTCCCTGCCCAGCTTCAGCACCTTCATGGAGGGCTACTCCAGCAACTACGAACTCAAGCCCTCCTGCCTGTACCAAATGCAGCCGTCGGGGCCACGGCCGCTGATTAAGATGGAGGAGGGTCGCGCGCACGGTTACCACCATCACCACCATGAGCACCACCACCACCACCACCACCAGCAGCAGCAGCAGCAGCAGCCATCCATTCCGCCCCCCTCCGGGCCGGAGGACGAGGTGCTACCCAGCACCTCCATGTACTTTAAGCAGTCCCCGCCGTCCACCCCCACCACGCCGGGCTTCCCCTCGCAGGCGGGGGCGATGTGGGACGACGCAATGTCCTCGGCGCCCGGCTGCATCGCGCCCGGCACGCTGCTCGACCCGCCGATGAAGGCGGTGCCCACGGTGGCCGGCGCGCGCTTCCCACTCTTCCACTTCAAGCCTTCGCCGCCGCACCCACCCGCGCCGGGCCCCGCCAGCGGCCACCACCTGGGCTACGACCCGACGGCCGCCGCCGCGCTTAGCCTTCCGCTGGGAGCCGCCGCTGCCGCTGCCGCCGCCGCCGCAGCCGCGGGCAGCCAGGCCGCCGCGCTCGAGGGCCACCCGTATGGGCTGCCTCTGTCCAAGAGGGCGCCCGCCCTGGCCTTCCCGCCGCTGGGCCTCACGGCCTCCCCCACCGCGTCCAGCCTCCTGGGTGAGAGCCCCAGTTTGCCGTCGCCGCCCAGCAGGAGCTCGGCCTCGGGCGAGGGCACGTGCGCCGTGTGCGGGGACAACGCCGCCTGCCAGCACTACGGGGTGCGCACCTGCGAGGGCTGCAAGGGCTTCTTCAAG
Seq A exon
GTGAGCCGCTCTCCTCCTCTCGGCTCCCCTCCCCTCCACTGCCTGCCTCCCCAGCCACCCGCTGAGAGCATCTAAGCGGGTCCTTCCCGGTCCTAACCGTTAGAGGTGTGATGTTACACTGTGCATTCCTGTAGCCTTTACTAGCACCTTCACACCCACTTTCTTGGGGCCTTTTAACTTGATGTCCATCACAGGAGGCTGCCCCAGGTGGGCTTGCAGAGACTGTGAACTTCCCGACTTGGCTTTACCGGCTGCAATTTTTTCTGGAGAGTTTTCAGAAGATTCGCAAAGGGATCTGTGACCTCAAAAATGCACACACCTCTCTGTATTCCTCTTCTATCCATCCCAAATGTCTGAAGGAATAGTCTTGTGTGCCAGGCCTTGGGTATTTGTATCCCATTTAATCCTCCTAGTGAGAGCTAGGACTCTAGATCAGACAGAACTGAGATTGAATTTTGGCCACCCACTAGCTAGTTTTATGAACGGCATCTTGAGGGTTTAAATTAGTTATCCTTGTTTTATAGATGAGGAGATGGAGGCTCAGAGAAGTTATTCAACTGCCCCTGGACACACACTCAGAAAGTGAGATGGAGGCAGGATGCCAACTGGTGTTTGTCTGACCCCAAAGTGCATGCTTTCTTCACAGTTCAGCAGCTGAAGAAGAGACAGGGACATCTAGGGGATGCAGCTTGGGGCAGCTCCCCTTGCAGAAGAGAGAAGCTGGAGTTTCATCAATCTGCTCCACTTCTGTGCCACACACAAGGCCAGATGTGGACACTCTTCATTAGCTCATAGACCCAAAGGAGAATTTTACAGTGGGAAGGGTCTTCAGCCTCCCCCATATTTTACCCATGAGGATATTGAAGGTTAAAGAGGTGATTTAGTGGTACATGGGGACAGTTCCAGCTAGTTTCTGCTACTCTGGAGTTCATTGCTCTTTGCACCACTCAAAGAGAAAAGGCCTTATTCTCTTGCAGCTCTACTTTTGCTCTTGACCCCCAGACACTTAATTCTGCACCACCCTCCCTGTTCTCACTGCCTTGGTCATTGCATCAGGTATTTCCAAACCCAAGAATGTTCTCCCACAGTTCTCAATTCCTAACCTCCAGTGCTGGCCAGGGTGGAGAGAGAGGAGAAGCTGGATGCTGACTGGGTAATGAGGATTTGGGAGGCCAATAGGCTGAGTCTTTGAGCATGCTGAAATTAAGACTCAGAACACCCAGAAAGGAATCCTTGATCTGTCACCTATTAATTTTATGATGTTGGGTAGGACACTTCCTTCCAGACCTCAGTTTCCCTATCAGGTGAATACAATACAGAGAAGAAGTGTTAGTTTTAAATGAGATAAAACATTTATGAAAATATAATTTTTAAAGGGTCATAAAAGAATAGTACATTGTAAATGAAAACTACAAAATATTTATGAAAAATGCACATGTGTACATTGGTATACATACCAACAAGCAACAGTTATTTTTGATCTGGAGATAGGAATCATGTGATTAATTAAATTGTGCAGACAAATGAGAAAATGTTTGTGGAAAGATTTTACAGTATATTAAGCGCCATACAAGAGGTATGCTAGATTATGATGTCTTAAATGTAGAACCGTCAGTTTAGTCATTTTTTTCTGTCAAGTAACTCCATTTCTTCAGCAGATCTGATTTTTACAGTGTTTCAGTGAAAATACTGAAAGGCAGTGAAACAGGCAGCCAGAAGAGGGAAAAGAAAGAAAAACAATTACGAGAAGTATAAGTAATCCATAAATATAACCACCCCTGAATAATTGAGAGTTGACCTAAATGCAGGAGTGATAATACATTTCTGGTCTGGAAATGTCAATTGTGTTCTCCAACAAGCATCCTTGTTCTACAGCAATACCTTGAAAACAAATCTATACTTGAATGGGTGGGAGTAGGATAGGGGAGAACCACCCCACGGATCTGTTAATTAAGGGAGCAGGAGCAGGTTTTACCCAGTGGCTTTCTACCATTAAATTGAATTCTTTAAAAATGTGACATGAAGTGCAGTTAATGATGGGAATTCAGTGATTGAACCATAACGATCTCTCCCTGTCCTTAAACAGTTGTGCAGGCACACACAAATGTTAGGAAGGTTTCAGGTTATTGGGAAAACATATACCTGAAGCAAAATGCCACCAGCACTCAAATTGGTATATCCTTGAGGATAATGACAAGAAATACAGTTTTCTAAAATTACTTTGAAAGAGAGCTTTTAATTACAATGAAAGAGAGCTTCATTCAGGAAACACAAGTTTCCTACCCTTACAGACTGCTGCAAATTTAAATGCTGGAAACATCAGAAGTATGTTGTATTTTTGAAATTTCTCATTTTGAACTAAAATCACCTGCTAAAGCAGGGAAAATGTATCTGGCTTTAAATTTTATATAAGCAGTTTAGAAACGATCCCTTAAAATGAAATTAAAAGGTGATAGAGTGAAAACTGATACAAGAGGATTGAGAATTGCTGAAAATTTAAAAAGATAGAAAGTAAATCTAGAATTTTAGACACAAAATAGATCACCAATCCTAGATTACCTAGATTTTTTTTTTTTCATGTAGCTCAGGCTTACCAAATAAATTCACCTTTCTGCTCTATTTGGAGTTGAATAGATTCAGGTAACTTCTGAATGAGTGATGAATATACATCCATTTGCACAGATTATTTTTATTTTTTTAAATCAAGCATTCTCTTGTATCTGGAGCATAAAATATCTTTTATTATTTCATGTTTACTTTTAAAATTGTATGTGATTCTGAAGAATACAACATTATTTTATATCCAGACCCAAGTTTAATGTTGCATCTTTTACAATATGGCTATTTTGTTCATGTCAATAGTCATTTATGACATAACCTATTAATGGGAATTTTCCTTGAAAATATATGGCCCTCATATTCCTTCCTTTATCTCATTCTTTTTTGTTTGTTTGTTTTTTCTTGGATATGATAGTGGTTTTTAGTATCCAGTTTTAAATCTTTACTTTCAAAAGTCAGAAATGGACAGTTTACCATTATTTTAAAAATAAAATACACTGCAAAGGCTGATTAAGTGATTTGTTTTTGCATTAAAACTTTATTTCCTATATGTTGTAACTAGAGAAGTCCTCATTTTTTGCTTTTTATGATTTCATCTCTATTGGTGGACAAAGCCAGTTTCTGTGATATTTGACTCACAATAGTGATAGGCAACAAAGTATATCCCAGATAATTTTGATTTTATTTTAATAAGGTCAGCAATAATCAGGGGAGTGGACCAAGTAGAAAATTGTTCCCAAGGGGATATTAAAAGTGAAGATAATCTAATCCTCCAAGGTATGATATGTTGACCTGGTAATTTCAGATATGATTTTATCATTCAGACTTGAATGTCTCCTGAGACTTGCTTCAGAACAATCCGAGATGATTTTCATTGTCAGCAGCTAACACTAATAAAATTGTTTTTCCTGCAGGCTAGTGTGTTAGGAAATTAAATTTATCTAATTATACGAATTGCACTGTCGCTTTTCACATTGTAATTAAAATACATCTTGTCAGGTCCTACCTCTTTCCAGAAACTATTAGTTGACTATCTGTGTATTGTATTTCCTCAG
Seq C2 exon
AGAACAGTGCAGAAAAATGCAAAATATGTTTGCCTGGCAAATAAAAACTGCCCCGTAGACAAGAGACGTCGAAACCGATGTCAGTACTGTCGATTTCAGAAGTGTCTCAGTGTCGGAATGGTTAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001864:ENSBTAT00000002429:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.555 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0253517=Zip=WD(100=32.0),PF0010513=zf-C4=PU(38.6=8.2)
A:
NA
C2:
PF0010513=zf-C4=PD(58.6=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]