GgaINT0099331 @ galGal3
Intron Retention
Gene
ENSGALG00000013568 | E1BYS2_CHICK
Description
NA
Coordinates
chr2:91705458-91708335:-
Coord C1 exon
chr2:91707451-91708335
Coord A exon
chr2:91705588-91707450
Coord C2 exon
chr2:91705458-91705587
Length
1863 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTTCTGTTGCCTTTTCTCAGAGG
3' ss Score
9.1
Exon sequences
Seq C1 exon
ATGCCCTGTGTGCAAGCGCAGTATAGCCCTTCGCCGCCCGGTTCGAGTTATGCAGCTCAGACCTACGCGTATGGCTCGGAGTACAGCTCGGAGATCATGAACCCGGACTATGGCAAGCTGAGCATGGAGCTGAGCGGCACCGAGATCACCGCCACCGCCACCACCTCCCTCCCCAGCTTCAGCACCTTCATGGAGGGTTACTCCGGCAGCTACGAGCTCAAGCCTTCCTGCCTCTACCAAATGCAATCCGCCTCCTCCGGCCAGAGGCCCCTCATCAAGATGGAAGACGCTCGGCTCTCCACCTACCAGCCCTCGCTGCCCCCCTCGGTGGACGAGAGCATGCCCAGCACCTCCATGTACTTCAAGCAGTCGCCTCCCTCCACGCCCACCACGCCCGGCTTCCCCCCACACCAGAGCCTGTGGGACGAGCCCCCGCTGCCTCCCACGCAGACCTGCCTGCCCCCCGGCCACCTGATGGAGGCCGCTCCCATGAAGACTGCGCCTCCGCGCTTCCCCCTCTTCCACTTCAAGCACTCTCCTCCCCACACGCCGCCGGCGGGCCCCCACATGTGCTACGACCCGGCCTCCCTGAGCCTGCCGCTGGGCTCTGACAGACCGCCGGCCGGCCAGGCGCCCATGGAGAGCCACTCCTACGGGCTGCCCCTGGCCAAGCGGCCGGCCACCTTAGCCTTCTCACCGCTCGGCCTCAACACGGCTGCCTCCGGCCTCATGGGCGAGGCCAGCGGTGGTGGCGGTGGCGGGCTGCCCTCCCCGCCCAGCAGGAGTTCCTCGTCCGGGGAGGGCACGTGCGCCGTCTGTGGGGACAACGCTGCCTGCCAGCACTATGGTGTGCGGACCTGCGAGGGCTGCAAGGGCTTCTTCAAG
Seq A exon
GTGAGACACCCTGCTCCCCTCCCTGCCTGCCGCCCCTGGGCTTCAAGCTCCGCACCCATCACTGGTAGTGGTAGAGGTGGCTCAGAAGGTCAGAGCGGCACCAGCACGAGGAGGAAACCTCAGGCAACGTTGCCTCGGTGCTGCTCTTGGTTCAGGTATCCCAGCACTGTAGCTTTGAAGCACTGCTGACAGCAGTAATCCACTTTGAGGGAGACAAAGCCATGTGCTGACATTTTTAAGACTGGAATTCCTTCTGCTTTTAGATTTGGGCACCTCATAATTTCAGCGAATTTAGTTCAGGTTTCGGTATATTTTTTTTTTTTAAGAAATGTTGCCAACGAAGCATTCAGGACTTTTTGGGGAGTGGTTTTGAGCAGTAGGCTTTAAAAAGTTGATAAATTCAAGGCCAGGTTGGATGGAGCTCTGGGCAGCCTGAGCTGGTGTGGGGCAGCCCTGCCCATAGCAGGGGGTGGGGTGGGGGGGCTTTGAGGTCCCTTCCAACCCAAACCATTCTGCGGTTCTGTGAGTCTATGAAATCTGGGGTTGATTGAATGTCTTTCTTTCAGCACAGATAGGAATTGTGCCCCTGTTCTGGCAAAAGATATCCTAACTACGATGGGAACAAAAATAGTCCCAAAATAGTTGCAGGGGAGGGCTCACCTCATTATGCTGTTGTTGTCGTGCACAGAACTGCTACTACTACTTGGTAATAACCCTTTGGCAACGTGCTAAAATACACATCTCCCCTGCAACTTGCTTGTTATTTAAAAGTAATTATAAAATGGAGCACAGATAACCTGGAAATGGCAGCTCCTGTGGGTCTGATCCTGCCCCCGTGGAAACCCATAGCATGTCCCTCGTTGGGGGCAGGATCCACAGCTTGTCGTGCACCCTTCTTTTCTCGGTTCTAAAGTGCAGTGAGCAGCATTTGCTGTGTCCCTTGTATTTAGTCCATTGCAGCTGCTGCTTGAAAAAGAAGGAAAGTGTTAAAATAGCATTTCCCCAATAATTTAATTGCAGTGAAAGATTTAATACCGAACGCTGAACTGATGAATTTGATCCTCTTCTGATGTCTTTCCTATTAATATCTTTCGGTGCTAAGCTGTCTTTGACTTTTAAGTACAAAAACAATATATAAATGTCTTAATCTATTATAATAATATATGTATGTATTTGTGACAACTCCTATTACATTCTTTCGAGGCTCACCAAGGTTTGTACAAATTTTTCACGTACTGCATAGGTTATATGTAGTTATATGCAAGCCATTTTAAGCGTTAATTACATGTGTATGGCTACAGTATAACTGGGTCCATTTTTTCCCAGAAGTCAGGCCGGCTTTCCCAGAATATTGAACGGAACCTATTTGGAGGAGTTCTGCTATTTTTACTTTTCTTCCCGCTGATTTTAATGGCCAACCAAAGCAGTTGTTGTGGCATTCGCCTAACAATAGCGATAGCAGGAGAAGTACATCGCAGATCGTTTTGATTTTGTTTTAATAAGGTCAGCAATAATCAAGGGAATGAACCAAGTAGAAAATTGTTCCCAAAGGGATATTAAAAGCGGAGATAATCTAATCCCCAAAGGTAGATGCGATGACCTGGTAATTTCAGATATGATTTTATCATTCAAAGTTGCCTGTCTCCGGAGACTTGCTTCAGAACAATCCTCGATGATTCTCATTGTCAGTAGCTAACACTAATAAAATTGTTTTTCCTGCAGGCTAGTGTGTTAGGAAATTAATTTTATCTAATTATATGAATTGCACTGTCGCTTTTCATGTTGTAATTAAAATACATGTTGTCAGGTTCCAAGTTGCTCACGAAACTCTCGGCTCGCTGTTTTTCTGTTGCCTTTTCTCAG
Seq C2 exon
AGGACGGTTCAGAAAAATGCAAAATATGTTTGCCTGGCAAACAAGAACTGTCCGGTGGACAAGAGACGCCGTAACAGATGTCAGTACTGCCGCTTTCAGAAGTGTCTCAGCGTCGGCATGGTGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013568:ENSGALT00000022087:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.549 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(38.6=9.2)
A:
NA
C2:
PF0010513=zf-C4=PD(58.6=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCACTCCTACGGGC
R:
AGACACTTCTGAAAGCGGCAG
Band lengths:
353-2216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]