BtaINT0105355 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99070250-99071839:+
Coord C1 exon
chr11:99070250-99070408
Coord A exon
chr11:99070409-99071738
Coord C2 exon
chr11:99071739-99071839
Length
1330 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
CTGTGTTCCTGTCATTTTAGATC
3' ss Score
9.92
Exon sequences
Seq C1 exon
GCACGGAGGCAGTTCCAGTCCCAGCTGGCTGACCTGCAGCAGCTGCCCGATATCCTTAAGATCACAGAGGCTAAACTGGCTGAGTGCCAGGATCAGCTGCAGGGCTATGAGCGGAAGAACATTGACCTCACAGCCATCATATCAGACCTGCGCAGCCGG
Seq A exon
GTAAGGGACTGGCAGAAAGGGTCCCACGAACTGGCCCGAGCAGGGGCCCGCTTACCAAGATGAGCTGCACGTGCGCGCCGCCCCCCCCCCAAGGGAGGACCACTTCCTTTTTCTTGGCTGCCGCTTTCTGAAAGGAGTGAGCTATCATCAGTGCTGTGAAATAAAAGTCTGGTGTGCCAAATGCCTTGTGTTTGCACAAAGTGATTGTAGTTATAGGAGCTGCCGGGCCCTCCTGCTCTCGCCGCTCCCCGAGTGCTCCAAGTCTCCGCCGGCCTTGCCCTTCAACGCTCTGCTGCTGTCCTCAAGCCTCATGCCACCAGTGGACACCAAGCCATAGGTTTTCTTTGTCTCCGTCTTTCTCTTGCTTTAGCTGCCTTTCCCTAGTCTGAATAGACCCCTTGCCTGAGCTTCTGTCCCAACAGAGGACTGCTTTTCTCCCAGAGGCAATCTGCCTTTGGGTGCCTGGAACCAAGCCGGCAAGGTCTAAGAAACGGTGCGCTTCTCATCTGCACTGTGACCTTGGGCGAGACCCTTCCCCTGTCTACACCTGCGTCCTTGCAGTAACGGTGGAAGTAGCTGCCATTTTTTGAGCATGTGCTCTGTGCTCCGGCATTCTCTCATTTAATTCTCCCAGTAACTTTGCAAAGGGTCTTATTTTCCCCATTTCACAAAAAGCAGCCAAGGGCAGAGAGGGGGAGAAGTCATTTCCTGAGGTCACAGGTCACACTCTCCTGAACTAATGCTTCTCAACAGGGACTGGAAGCCAGCCAGCTCTGTCTGGTTCCCAAGCCCATGTTCTTAGTACTTGAAATCACCTGCCTACTCTTGAACCTGAGTGTACTCAGGACCTTTCAGGCCTGGATGTCTGAGTCTTCTGGATAACTTCTCAAACCTGCCAGTCTGAAGGACTTGATAGATTTCCCATGGCCTTGCTTGCAGTGGTCCCCAGTTAAGGAGAATGACATCAGCAGTCCCACCAACATCCTTGGTAAAGCTCGGTAGTGGGTTGCGTGGACCAGTTAGGCCTGCTCTCTGCTTCTGCCTTATGTCTGCCCAGATCCTACTGACTGGCCTCTCCTGAACCAGACTGTGTCATCATGGCTATTCAGGATCGAAGCTGGCTTCTCTCAGCGTGGGAGAGCCTTCGATCTCGGGGGTTGGGCCTAACCTGTCCCCACTCTACTCTCTCCTCCAGGTTGTGCGTTGAGACTTGGATGCCTGCTGAGGGCAGCGTGCCTCTCTCCTGGGTGTGGATGACAGGTCACAGGGATAAGGGAGGGCTGTACCTGGAGGTTCTTTTGTAAACCAGTCTGTGTTCCTGTCATTTTAG
Seq C2 exon
ATCGAACACCAGGGGGACAAGCTGGAGATGGCGAGAGAGAAACATCAGGCTTCCCAGAAAGAAAATAAACAGCTGAGTCTGAAGGTGGATGAACTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567:ENSBTAT00000020325:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.647
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCAGTTCCAGTCCCAG
R:
TCTCCAGTTCATCCACCTTCAGA
Band lengths:
255-1585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development