BtaINT0106234 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35482981-35483405:-
Coord C1 exon
chr15:35483297-35483405
Coord A exon
chr15:35483028-35483296
Coord C2 exon
chr15:35482981-35483027
Length
269 bp
Sequences
Splice sites
5' ss Seq
TTGGTCTGT
5' ss Score
0.67
3' ss Seq
CCTTGGTCTCTGTGTTTCAGCAC
3' ss Score
9.45
Exon sequences
Seq C1 exon
GGCTGATCTTCGAGGATGGGGGCTGTGTGGCACCGGCTGAGTGTCCCTGTGAGTTCCATGGGACCCTGTACCCGACTGGCTCTGTGGTGAAAGAAGACTGCAATTCTTG
Seq A exon
GTCTGTGTCTACTGCTGGGGAGGGGAACGGTGACTTCTGGGGCTTTCCATCAGGACTACCCCTCCACCCCTCTAGGAGCCTGATCACCTGGGGCACTCACTCAGCACCTCTGAGTCACAGATCTCATCAGATCCACTCTGTGGGTGGACTCTCCACCACCCATTTTAGAGCTGGGAAGACTGAGGGCTGGGAAGGAGCTCTGCAGCCCTCGAGCATCTATCCTAGCCCTGCAGGGGTGAGTCCCTACTCCCTTGGTCTCTGTGTTTCAG
Seq C2 exon
CACATGCACTGCGGGCAGGTGGGTGTGCAGCACGTCTGTCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987:ENSBTAT00000064728:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(25.5=37.8),PF0009313=VWC=PU(37.0=54.1)
A:
NA
C2:
PF0009313=VWC=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGATCTTCGAGGATGGGG
R:
CTGGGCAGACAGACGTGCT
Band lengths:
156-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development