MmuINT0113985 @ mm9
Intron Retention
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:53509481-53509888:+
Coord C1 exon
chr7:53509481-53509589
Coord A exon
chr7:53509590-53509841
Coord C2 exon
chr7:53509842-53509888
Length
252 bp
Sequences
Splice sites
5' ss Seq
CTGGTCTGT
5' ss Score
3.05
3' ss Seq
TTGTGATCTCTGTGTTTCAGTAC
3' ss Score
8.16
Exon sequences
Seq C1 exon
GGCTGATCTTTGAGGATGGAGGCTGCATGTCACCAGCTGAGTGTCCCTGTGAATTCCATGGAACCCTGCACCCGCCTGGCTCTGTGGTGACAGAAGACTGCAATGCCTG
Seq A exon
GTCTGTGTCCCCTGCCTGGAGGGAGGGGCCTGGGAAGGTCAGAGCTTCCTGTCAGGCTGCATGCCTGGGGTTGAGGAACCCTGGACAAGCAAGGGTTGCTCACTTACCTCTTTGAGCTCCAAGGGGATGTCATTAGATCTATGGGGGAGGGGGAGAGATTTCTACCATCCACTTTAGAAATTGGACTCTGCGGGCTGGGGCCTGGGACAGTGTCTGGGCATTGAGGCCACCTTTGTGATCTCTGTGTTTCAG
Seq C2 exon
TACGTGCACAGCAGGGAAGTGGGTGTGCAGCTCTTCCGTCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-Otog:NM_013624:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(25.5=37.8),PF0009313=VWC=PU(37.0=54.1)
A:
NA
C2:
PF0009313=VWC=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGATCTTTGAGGATGGAGG
R:
CTGGACAGACGGAAGAGCTG
Band lengths:
156-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: