GgaINT0055855 @ galGal4
Intron Retention
Gene
ENSGALG00000006208 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr5:11397893-11398439:+
Coord C1 exon
chr5:11397893-11398001
Coord A exon
chr5:11398002-11398392
Coord C2 exon
chr5:11398393-11398439
Length
391 bp
Sequences
Splice sites
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
3' ss Seq
AACCTTTTTGCTTATTTCAGCAC
3' ss Score
7.18
Exon sequences
Seq C1 exon
GCTTAATTTATGAAAATGAGTTGTGTGTCAAGCCTATGGACTGTCCTTGTGATTACCATGGAAGTTCTTTTGAAATAGGTTCTGTGGTTTATGAGGAATGTAATAATTG
Seq A exon
GTTAGTAGTCTTTCTTTTAATACTGTAGACTTAATCCTTTCATCGTTATGAGAGAGAGATGGCACTTATGGCCTATTGGGTAAAATTGACAAGTCGTTACAATTTCTACATACAAAACTTGTTCCATAGACATCTAGCTGCTATTAAGAGACGTATAGAAGAAACTATAGATTGGCTAATGGAGAAGAAGAGTAAATCATGGATATTGCATGGAGTAAGGAAATGTTTAGATTTTTTTCTTGAACTCTGTCTAAAAGCAATCTTAGTAGGAGAATACTTTGACTTTTCTTTCTTCTGTTGTTGCCCTTGGAATCTAGGAAAAACAACTGAGAATAGCCATACGTACTTTAGAAAACAAAATCTCAATATGAAACCTTTTTGCTTATTTCAG
Seq C2 exon
CACTTGCATTGGAGGAAAATGGATTTGTACCAATCTTACGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006208:ENSGALT00000010023:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(25.9=37.8),PF0009313=VWC=PU(34.5=54.1)
A:
NA
C2:
PF0009313=VWC=FE(27.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]